Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3341g00032 ATGGGGAAGCTGAATGATGGGAGAGAGATTGCGGTGAAGAAGTTATCACACACCTCAAATCAAGGGAAGAAGGAGTTCACGAATGAGGCCAAGTTATTGGCTCGTGTGCAGCATCGGAATGTGGTAAATTTGTTGGGTTATTGTGTCCATGGCACAGAGAAGCTACTTGTTTATGAGTATGTCCCTCATGAGAGCCTTGACAAGCTTCTATTCAAATCGGGTAAGAGAGAGCAGCTTGATTGGAAACTTAGGTATGGAATAATAACGGGTGTGGCGAAGGGATTGCTTTATCTGCACGAAGACTCGCACCATTGCATCATACATCGTGACATTAAAGCTAGTAACATCTTGCTTGATGACAAATGGACGCCCAAGATTGCAGACTTTGGAATGGCACGTCTCTTCCCAGAAGATCAAACCCAGGTCAATACACGTGTTGCTGGAACCAATGGGTATATGGCTCCGGAGTATGTGATGCATGGAAATCTATCTGTGAAGGCAGACGTATTCAGCTATGGAGTTTTGGTATTGGAGTTGATCACTGGCCAACGAAACTCCTCTAATTTTGATGTGGATTCGCAGAATCTGCTTGATTGGGCATACAAGCAGTACAAGAAAGGGAAGAGTTTAGAAATTGTAGATTCGGCATTAGCATCTACGATGGTAGTTGAACAAGTAACCATGTGCATTCAACTGGGTCTGCTATGCATTCAAGGTGATCCACATCTACGTCCAAACATGAGACGTGTGGTGGTGATGCTGTCAAGAAAGCCAGGTCACATGGAAGAACCAACGAGACCAGGAGTACCTGGTTTCAGATATAGAAGACCTTCTAGGCAATCTGCAACATTGTCTTCCACTCCTGGTACCTCTGGTTCACAGACTACTGATTCAAGCAACAACTGTACCACTCTTACTACTACTGTAACAGGAACTACCTCAGCTACTGCTGAAATAGACCCGAAAGGGAAAGGGAAACGTCCAATGCATGGTTAG 996 0.4478 MGKLNDGREIAVKKLSHTSNQGKKEFTNEAKLLARVQHRNVVNLLGYCVHGTEKLLVYEYVPHESLDKLLFKSGKREQLDWKLRYGIITGVAKGLLYLHEDSHHCIIHRDIKASNILLDDKWTPKIADFGMARLFPEDQTQVNTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGQRNSSNFDVDSQNLLDWAYKQYKKGKSLEIVDSALASTMVVEQVTMCIQLGLLCIQGDPHLRPNMRRVVVMLSRKPGHMEEPTRPGVPGFRYRRPSRQSATLSSTPGTSGSQTTDSSNNCTTLTTTVTGTTSATAEIDPKGKGKRPMHG 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3341g00032 331 SMART serkin_6 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3341g00032 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 106 118 IPR008271 GO:0004672|GO:0006468
Gabi3341g00032 331 Pfam Protein tyrosine and serine/threonine kinase 6 253 IPR001245 GO:0004672|GO:0006468
Gabi3341g00032 331 Gene3D Phosphorylase Kinase; domain 1 1 60 - -
Gabi3341g00032 331 MobiDBLite consensus disorder prediction 278 317 - -
Gabi3341g00032 331 ProSiteProfiles Protein kinase domain profile. 1 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3341g00032 331 CDD STKc_IRAK 2 256 - -
Gabi3341g00032 331 FunFam Cysteine-rich receptor-like protein kinase 10 62 266 - -
Gabi3341g00032 331 MobiDBLite consensus disorder prediction 258 331 - -
Gabi3341g00032 331 SUPERFAMILY Protein kinase-like (PK-like) 5 282 IPR011009 -
Gabi3341g00032 331 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 307 - -
Gabi3341g00032 331 Gene3D Transferase(Phosphotransferase) domain 1 61 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3341g00032 Gabi-Chr3341 282683 296198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3341g00032 2 297 Receptor kinase-like Gene Family AT4G11490 49.833 1.45e-99 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3341g00032 PK_Tyr_Ser-Thr 6.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3341g00032 - - gmx:100795769 531.561