Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3341g00030 ATGGCTGCACAGGAGCAGAAGATCTTTGCCTATGAAACCTTGGCTGCTGCCACCAAGAATTTCAGTGCTCTTCACAAGCTAGGTCAGGGAGGTTTTGGACCTGTCTTCAAGGGGAAGCTGAATGATGGGAGAGAGATTGCGGTGAAGAAGTTATCACACACCTCAAATCAAGGGAAGAAGGAGTTCACGAATGAGGCCAAGTTATTGGCTCGTGTGCAGCATCGGAATGTGGTAAATTTGTTGGGTTATTGTGTCCATGGCACAGAGAAGCTACTTGTTTATGAGTATGTCCCTCATGAGAGCCTTGACAAGCTTCTATTCAAATCGGGTAAGAGAGAGCAGCTTGATTGGAAACTTAGGTATGGAATAATAACGGGTGTGGCGAAGGGATTGCTTTATCTGCACGAAGACTCGCACCATTGCATCATACATCGTGACATTAAAGCTAGTAACATCTTGCTTGATGACAAATGGACGCCCAAGATTGCAGACTTTGGAATGGCACGTCTCTTCCCAGAAGATCAAACCCAGGTCAATACACGTGTTGCTGGAACCAATGGGTATATGGCTCCGGAGTATGTGATGCATGGAAATCTATCTGTGAAGGCAGACGTATTCAGCTATGGAGTTTTGGTATTGGAGTTGATCACTGGCCAACGAAACTCCTCTAATTTTGATGTGGATTCGCAGAATCTGCTTGATTGGGCATACAAGCAGTACAAGAAAGGGAAGAGTTTAGAAATTGTAGATTCGGCATTAGCATCTACGATGGTAGTTGAACAAGTAACCATGTGCATTCAACTGGGTCTGCTATGCATTCAAGGTGATCCACATCTACGTCCAAACATGAGACGTGTGGTGGTGATGCTGTCAAGAAAGCCAGGTCACATGGAAGAACCAACGAGACCAGGAGTACCTGGTTTCAGATATAGAAGACCTTCTAGGCAATCTGCAACATTGTCTTCCACTCCTGGTACCTCTGGTTCACAGACTACTGATTCAAGCAACAACTGTACCACTCTTACTACTACTGTAACAGGAACTACCTCAGCTACTGCTGAAATAGACCCGAAAGGGAAAGGGAAACGTCCAATGCATGGTTAG 1104 0.4529 MAAQEQKIFAYETLAAATKNFSALHKLGQGGFGPVFKGKLNDGREIAVKKLSHTSNQGKKEFTNEAKLLARVQHRNVVNLLGYCVHGTEKLLVYEYVPHESLDKLLFKSGKREQLDWKLRYGIITGVAKGLLYLHEDSHHCIIHRDIKASNILLDDKWTPKIADFGMARLFPEDQTQVNTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGQRNSSNFDVDSQNLLDWAYKQYKKGKSLEIVDSALASTMVVEQVTMCIQLGLLCIQGDPHLRPNMRRVVVMLSRKPGHMEEPTRPGVPGFRYRRPSRQSATLSSTPGTSGSQTTDSSNNCTTLTTTVTGTTSATAEIDPKGKGKRPMHG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3341g00030 367 FunFam Cysteine-rich receptor-like protein kinase 10 1 96 - -
Gabi3341g00030 367 MobiDBLite consensus disorder prediction 294 367 - -
Gabi3341g00030 367 Pfam Protein kinase domain 22 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3341g00030 367 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 343 - -
Gabi3341g00030 367 ProSiteProfiles Protein kinase domain profile. 21 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3341g00030 367 Gene3D Transferase(Phosphotransferase) domain 1 97 300 - -
Gabi3341g00030 367 SMART serkin_6 21 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3341g00030 367 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Gabi3341g00030 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Gabi3341g00030 367 SUPERFAMILY Protein kinase-like (PK-like) 6 318 IPR011009 -
Gabi3341g00030 367 FunFam Cysteine-rich receptor-like protein kinase 10 98 302 - -
Gabi3341g00030 367 MobiDBLite consensus disorder prediction 314 353 - -
Gabi3341g00030 367 CDD STKc_IRAK 27 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3341g00030 Gabi-Chr3341 282683 296711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3341g00030 9 333 Receptor kinase-like Gene Family AT4G11490 50.305 2.62e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3341g00030 Pkinase 3.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3341g00030 - - gmx:100795769 600.897