Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3341g00029 ATGGACAAATTTCTTCAGAGTCTTGGCAAACACTTCAAATTCGGTTTCGGTAAAGAGCGAAACAATGAAGCTGACATACAGAGAATGGCTGCACAGGAGCAGAAGATCTTTGCCTATGAAACCTTGGCTGCTGCCACCAAGAATTTCAGTGCTCTTCACAAGCTAGGTCAGGGAGGTTTTGGACCTGTCTTCAAGGGGAAGCTGAATGATGGGAGAGAGATTGCGGTGAAGAAGTTATCACACACCTCAAATCAAGGGAAGAAGGAGTTCACGAATGAGGCCAAGTTATTGGCTCGTGTGCAGCATCGGAATGTGGTAAATTTGTTGGGTTATTGTGTCCATGGCACAGAGAAGCTACTTGTTTATGAGTATGTCCCTCATGAGAGCCTTGACAAGCTTCTATTCAAATCGGGTAAGAGAGAGCAGCTTGATTGGAAACTTAGGTATGGAATAATAACGGGTGTGGCGAAGGGATTGCTTTATCTGCACGAAGACTCGCACCATTGCATCATACATCGTGACATTAAAGCTAGTAACATCTTGCTTGATGACAAATGGACGCCCAAGATTGCAGACTTTGGAATGGCACGTCTCTTCCCAGAAGATCAAACCCAGGTCAATACACGTGTTGCTGGAACCAATGGGTATATGGCTCCGGAGTATGTGATGCATGGAAATCTATCTGTGAAGGCAGACGTATTCAGCTATGGAGTTTTGGTATTGGAGTTGATCACTGGCCAACGAAACTCCTCTAATTTTGATGTGGATTCGCAGAATCTGCTTGATTGGGCATACAAGCAGTACAAGAAAGGGAAGAGTTTAGAAATTGTAGATTCGGCATTAGCATCTACGATGGTAGTTGAACAAGTAACCATGTGCATTCAACTGGGTCTGCTATGCATTCAAGGTGATCCACATCTACGTCCAAACATGAGACGTGTGGTGGTGATGCTGTCAAGAAAGCCAGGTCACATGGAAGAACCAACGAGACCAGGAGTACCTGGTTTCAGATATAGAAGACCTTCTAGGCAATCTGCAACATTGTCTTCCACTCCTGGTACCTCTGGTTCACAGACTACTGATTCAAGCAACAACTGTACCACTCTTACTACTACTGTAACAGGAACTACCTCAGCTACTGCTGAAATAGACCCGAAAGGGAAAGGGAAACGTCCAATGCATGGTTAG 1188 0.4487 MDKFLQSLGKHFKFGFGKERNNEADIQRMAAQEQKIFAYETLAAATKNFSALHKLGQGGFGPVFKGKLNDGREIAVKKLSHTSNQGKKEFTNEAKLLARVQHRNVVNLLGYCVHGTEKLLVYEYVPHESLDKLLFKSGKREQLDWKLRYGIITGVAKGLLYLHEDSHHCIIHRDIKASNILLDDKWTPKIADFGMARLFPEDQTQVNTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGQRNSSNFDVDSQNLLDWAYKQYKKGKSLEIVDSALASTMVVEQVTMCIQLGLLCIQGDPHLRPNMRRVVVMLSRKPGHMEEPTRPGVPGFRYRRPSRQSATLSSTPGTSGSQTTDSSNNCTTLTTTVTGTTSATAEIDPKGKGKRPMHG 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3341g00029 395 FunFam Cysteine-rich receptor-like protein kinase 10 126 330 - -
Gabi3341g00029 395 SUPERFAMILY Protein kinase-like (PK-like) 34 345 IPR011009 -
Gabi3341g00029 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Gabi3341g00029 395 ProSiteProfiles Protein kinase domain profile. 49 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3341g00029 395 FunFam Cysteine-rich receptor-like protein kinase 10 13 124 - -
Gabi3341g00029 395 MobiDBLite consensus disorder prediction 342 381 - -
Gabi3341g00029 395 Gene3D Phosphorylase Kinase; domain 1 14 124 - -
Gabi3341g00029 395 CDD STKc_IRAK 55 320 - -
Gabi3341g00029 395 SMART serkin_6 49 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3341g00029 395 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 371 - -
Gabi3341g00029 395 Pfam Protein kinase domain 50 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3341g00029 395 MobiDBLite consensus disorder prediction 322 395 - -
Gabi3341g00029 395 Gene3D Transferase(Phosphotransferase) domain 1 125 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3341g00029 Gabi-Chr3341 282683 296711 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3341g00029 37 361 Receptor kinase-like Gene Family AT4G11490 50.305 1.41e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3341g00029 Pkinase 4.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3341g00029 - - gmx:100795769 638.262