Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3341g00023 ATGATGACTCCAAACTTGAACTTGGAACCTGAAAATCATTCAGAAGGTAGCAGCCAAGTGGCTTCCAAAATATCCTTACAAGAAGCATCCCATGATCTTACTAAGGACAGCACCACCACTTCCTCCTGTCTTACAAACCTTACAAAGGCTGAAGCTGATCCAGGTTCTATTACCCTTGATTTGACACTCAACTTCAATTCCAGTGATGAGTTGAAAGGTTCAAGTGATGCTAGCAGTGAAGTGGGAGCTGAAGCTCATCATGCAGCAACTCCAAGAGTTTTCTCTTGTAATTATTGCAGGCGCAAGTTCTTCAGCTCACAGGCATTGGGGGGTCACCAAAATGCTCACAAAAGAGAGAGGACAATGGCTAAGCGTGCAATGAGAATGGGGATGTTCACTGAGAGGTACACTAGCTTGGCATCACTACCTCTTCATGGTTCACCTTTTCGCTCTCTTGGTATTGAAGCTCATGCTGCAATGCACCGAAGACAAATGCCATCACTGACAACTCCTGACATGAGAGCTGGTGCAAAATTTGAGAAAAACCACCATTTTGGATCACTAGTTTACATGGAAGATGATGATATGAGTTTCTTTTGGCCTGGAAGTTTCAGACAGGTGCACCAAGGAGCTGGTGTTGATCTTGGAAATGCTCAAACTATGAATACTAGCTTTGTTCCAATGGCTCCTCCTCCTCCACCACAAACATCTACATCCCCTGATCTCACATTGAAGCTTTAA 741 0.4413 MMTPNLNLEPENHSEGSSQVASKISLQEASHDLTKDSTTTSSCLTNLTKAEADPGSITLDLTLNFNSSDELKGSSDASSEVGAEAHHAATPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGIEAHAAMHRRQMPSLTTPDMRAGAKFEKNHHFGSLVYMEDDDMSFFWPGSFRQVHQGAGVDLGNAQTMNTSFVPMAPPPPPQTSTSPDLTLKL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3341g00023 246 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Gabi3341g00023 246 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Gabi3341g00023 246 FunFam Zinc finger protein 2 71 140 - -
Gabi3341g00023 246 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3341g00023 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Gabi3341g00023 246 Gene3D Classic Zinc Finger 74 140 - -
Gabi3341g00023 246 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 25 171 IPR044246 GO:0009788
Gabi3341g00023 246 MobiDBLite consensus disorder prediction 222 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3341g00023 Gabi-Chr3341 179771 184489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3341g00023 88 246 C2H2 Transcription Factor Family AT1G66140 46.524 1.19e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3341g00023 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3341g00023 - - gmx:100775305 366.696