Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3341g00022 ATGCTTGGAAGTAAAGATCTTCGTAATGGTGCTGTTGAATCTGAGGGTGAGAACTCAAGGAGCAAGTTGTCAAGGCACAATTTTGAGCCTATCAAGGAGTACCCAGAGAAGAAAGGTGTTGATTTTCTGAGAGATTCAGAATTGGGTGGTGGTGGTGGTGGTGGTGTTGATGGGGTTCTTCAGTTGAAACACACTAAGGTTGTTGGTTGTTCAGGACTGCAAGAGCTTACCCTCAGCTACCTTTGTGATAACACAAAATTGGATCTTGCTGAGAAAGAGACTCCTGGTAAAAGCTTGCTGAATTCCTTGGAAAAAGTGAGCCACAAAGGTAAAGAGGTTGTCGTTTCCGAGGTTTCAAATCAGGATGGTAAATGGGTGGAAAGAGATTTCTTGAGCCTGAGTGAAACCAGAGAGGATTCTTCAAAGCGATCGCTTGAAGAAGAAGAGGTTGAAAGGGTGGGTAATAGGGACAAGAAGCCAAAGCTGGAGACACTTAATCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCTCTCACAGCTTCAAACGCCTTGCAAAATGGTGGTGATCAACCAGTTAGAACTAAACCTAGCAGGCCATCAACTACTCACAATTCATATTCAAATGATTATACAACAGCTTCTTTGTCTTACTCTTATTCTCACCCTTTCTCACACAACCCAAGTTGCTCACTCACCCGCAATTCAACTGATAATTTTGATTATTCAGTGAGCAAAGATGACCAAATTTGGAATTGTGGGGAGGGGACTAATGGGTCTGTTCATAGTAGGTTCAAGCCAATAGGAGACGGGGTTGCTTTGTCCAATAATTTTGGTGGTCTTAGTTCCTTCATGCAAGGTAATAGCCAGTTTAAAACTACTAGTTCAGATAATCATTCTTTTTTCCCTTCAGAATTGCCTGCCAGACCAAGATTTGAGGCTCAGTCAGGGGACTCAAGGGGAAGGAATTCTGAGAATCTGAGAGCCTTGGAAGGCTTAGATGGTGGGAAGATAAGGAAGCTTTCTAGACCAGAGAGAATTGTCAGGGAAATTGTTTCAGAGACTATCCTTCCCATGGCTTTGACAATTCAGGAGCTTACTGATGAAGTCGTATCATCAACTAAGGAATACTTGAAGAATCTCATTGAGAAGCCTGACAAGAAAGAGGAATTGGTCAGCCTTCAAAATCAGCTTGAGAGAAGATCTGACCTTACCAAGGAGACTCTTTCAAAGTGCCATAAAGTGCAATTAGAGATTTTAGTGGCTGTCAAGATGGGGCTTGCAAGCTTCTTATCTAGCAAAGTTCACTTATCTGAGATGGTAGAGATTTTCTTGTATAGGAGATGTAGAAATGTGATCTGCAAGCATGTCCTTCCTGTTGATGACTGTGACTGCAAGATTTGCTCAGGAAATAAGGGGTTTTGCAGTTCTTGCATGTGTCCTATCTGTTTGAACTTTGATTGTGCAAGTAACACTTGTAGTTGGATTGGTTGTGATGTTTGTTCCCATTGGTGCCATGCTGCCTGTGGCATTCAGAGAAATCTCATCAAACCTGGTCCTAGCTTGAAGGGACCTTCAGGGACTTCAGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCTTCTGAAATGTTTGGGTTCGTTAAAGATGTTTTCATGTGTTGTGCAAAGGATTGGGGCCTTGAAACCTTGCTGAAAGAGCTTGGTTGTGTAAGGAGGATTTTCAGGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGATAAAACTGATGACATGCTATTAAAGCTTCAAACCAAGATGGTATCTCCTTTGGATGCCTGCAATTACATCATACAATTTTTCAGCTATGCAGATGGAATGTCAAACTTTCCTGCTCCTAGTATTTCGTCAAAGGATTCGGCAGTCTCTCAAGCTAACCTTACAAAGAATACACCATCTCTTGTGAAATCTAATTCTCTAATACCAAAATATGGTTATGACATGAGCTATTCTAGGCCCCATCATGATGCCCTTTCAAACGATCTTCATCAGAAAGACCTCAAAGCTTCCCTCTTAAATGAACTAAAAAATGAGGACGATTTCCAATTGGGAGCTTTATTAAGGAAAGGTGGACTTGAAAGTTTGGAGAGCATTGTGAGGATAAAGGAGGCAGAAGCTAGAATGTTCCAAACCAAAGCTGATGAAGCAAGGAGAGAGGCAGAAGGGTACCAGAGGATGCTTAGGACCAAGACTTCACAGATGGAAGAAGAATATGCTGAAAAGCTTTCCAAACTTCGTTTGCATGAGACAGAGGAAACACAGAGGAAGAAATTGGATGAAGTCAAAATCTTGGAAAATTCCTACTTTGATTACTATAAAATGAAAAAAAGAATGAGAGATGAGATTGATGGTTTATTGCACAGAATGGAGGCAACAAAGCAGCAATGGGTTTGA 2433 0.4159 MLGSKDLRNGAVESEGENSRSKLSRHNFEPIKEYPEKKGVDFLRDSELGGGGGGGVDGVLQLKHTKVVGCSGLQELTLSYLCDNTKLDLAEKETPGKSLLNSLEKVSHKGKEVVVSEVSNQDGKWVERDFLSLSETREDSSKRSLEEEEVERVGNRDKKPKLETLNLSLALPDVSLSLTASNALQNGGDQPVRTKPSRPSTTHNSYSNDYTTASLSYSYSHPFSHNPSCSLTRNSTDNFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVALSNNFGGLSSFMQGNSQFKTTSSDNHSFFPSELPARPRFEAQSGDSRGRNSENLRALEGLDGGKIRKLSRPERIVREIVSETILPMALTIQELTDEVVSSTKEYLKNLIEKPDKKEELVSLQNQLERRSDLTKETLSKCHKVQLEILVAVKMGLASFLSSKVHLSEMVEIFLYRRCRNVICKHVLPVDDCDCKICSGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLLKELGCVRRIFRGSEDRKGKELHDKTDDMLLKLQTKMVSPLDACNYIIQFFSYADGMSNFPAPSISSKDSAVSQANLTKNTPSLVKSNSLIPKYGYDMSYSRPHHDALSNDLHQKDLKASLLNELKNEDDFQLGALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGYQRMLRTKTSQMEEEYAEKLSKLRLHETEETQRKKLDEVKILENSYFDYYKMKKRMRDEIDGLLHRMEATKQQWV 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3341g00022 810 CDD PHD_OBE1_like 478 537 IPR047578 -
Gabi3341g00022 810 MobiDBLite consensus disorder prediction 10 32 - -
Gabi3341g00022 810 Coils Coil 712 746 - -
Gabi3341g00022 810 MobiDBLite consensus disorder prediction 182 208 - -
Gabi3341g00022 810 MobiDBLite consensus disorder prediction 136 157 - -
Gabi3341g00022 810 MobiDBLite consensus disorder prediction 1 32 - -
Gabi3341g00022 810 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 485 505 IPR004082 -
Gabi3341g00022 810 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 361 383 IPR004082 -
Gabi3341g00022 810 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 745 767 IPR004082 -
Gabi3341g00022 810 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 706 726 IPR004082 -
Gabi3341g00022 810 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 439 460 IPR004082 -
Gabi3341g00022 810 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 558 577 IPR004082 -
Gabi3341g00022 810 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 400 415 IPR004082 -
Gabi3341g00022 810 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 104 809 IPR004082 -
Gabi3341g00022 810 Pfam Coiled-coil region of Oberon 670 799 IPR032535 -
Gabi3341g00022 810 Pfam PHD - plant homeodomain finger protein 448 571 IPR032881 -
Gabi3341g00022 810 Coils Coil 788 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3341g00022 Gabi-Chr3341 170380 174435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3341g00022 448 604 PHD Gene Family AT5G57380 26.115 4.73e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3341g00022 - - gmx:100820216 1370.91