Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3340g00001 ATGTGCGAAACAAAAGCAATTGAGACAACACATAAAAACAAAGAAACAATGGCAAGGGTAAGGGAGAAGCTATACGTCACCGTTCCGAGCCCTTTTCGGTGCCCAATCTCAATGGACGTGATGAGGTCCCCTGTAAGCCTGTGCACCGGCGTCACATACGATCGCTCCAGCATCCAGCAGTGGCTTGAATCAGGTCATGACACGTGTCCAGCCACCATGCAGGTCCTTCCCTCTAAGGACTTCATCCCCAACCTCACCCTCCATCGCCTCATCCGTCTCTGGCTCCTCTCCGGCGAACCTTTCTCGCCGGAGTCCCGATCCTCCGGCGACCACCTCCGCGTTCTCCTCCGCGAAATCCAAACCGGAGCCGAAGACCTCGCCGTTTCCCTCTCCAAAATCGCCGAATTCGCCAAAATTTCCGGCGAGAATCGCCGCTTACTTGCGACTTTCCCTGGCTTCGACTCCGCGATCGTTCGTGCTCTAGCCGGAAGCAGTTCCCGGATTGACGCGTCGGAGAATGCGATCTCGATTTTGGATTCGGTTTTCCGAGCAAACGGAGATGCGGCCTCCGGCGCCGGAGAGCGAGTACGACGGTTGATTCTTGATACTCGCGAAGAATGCTTCGCTTCGATCGTTTTCGTTCTGAGAAACGGCTCTCTGAAATCGAAGATCGAAACTGTTAGGGTTTTGGAGTTTCTCGCCGGCGATGATTTCCGATCGAAGCGGTGGATCGCCGAAACGCGAGGTTTGTTGTCGTTGCTCGCGAGCTTTTTCAGCGACGGTGGCAACGAGGAGCTAAACGACGCCGTTTTGTCGCTACTAGTTGTCGTTTCGGTGACTCAGTCAGCGAAGGTGGAACTTGTCCGTTCCGGACTTGTCGAGGCGGTTTCGAAGACGCTGGTGAGCGCAGGTTCGACGACGGCGGAGAGGTGCCTGAGGATGCTGGCGGTGGTGGCGACGTGCGCGGAAGGTAGGGCGGCGATGGCAGCAGAACCGTCGTGTGCGGCGGCGGTGCTGGAGAGGCTGGCGAAGGCGCCTAATGCTGCGGCGGAAGACGCGGTGGCAGTGCTGTGGAGCCTGTGTTGTTTGTGCGGTAACGTGAAGGTGAGGGATGACGTGGCGAAGCGAAACGGCGTCGTGGTGATCCTCTTGGTTATGCAGAGGGGTTACGAGGAGCACGTGAGGAGCATGTGCGTCGATTTGATTAAGGCTCTCAAGGGTGCGTGCAAGGACGGGTTGCAATTAGCACTGGGAAGCTATGACACCAAAACCACTCATATTAAGCCTTGCTAA 1293 0.5661 MCETKAIETTHKNKETMARVREKLYVTVPSPFRCPISMDVMRSPVSLCTGVTYDRSSIQQWLESGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSGEPFSPESRSSGDHLRVLLREIQTGAEDLAVSLSKIAEFAKISGENRRLLATFPGFDSAIVRALAGSSSRIDASENAISILDSVFRANGDAASGAGERVRRLILDTREECFASIVFVLRNGSLKSKIETVRVLEFLAGDDFRSKRWIAETRGLLSLLASFFSDGGNEELNDAVLSLLVVVSVTQSAKVELVRSGLVEAVSKTLVSAGSTTAERCLRMLAVVATCAEGRAAMAAEPSCAAAVLERLAKAPNAAAEDAVAVLWSLCCLCGNVKVRDDVAKRNGVVVILLVMQRGYEEHVRSMCVDLIKALKGACKDGLQLALGSYDTKTTHIKPC 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3340g00001 430 SUPERFAMILY ARM repeat 204 412 IPR016024 -
Gabi3340g00001 430 SUPERFAMILY RING/U-box 22 96 - -
Gabi3340g00001 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 101 IPR013083 -
Gabi3340g00001 430 PANTHER WDSAM1 PROTEIN 25 410 IPR045185 GO:0061630
Gabi3340g00001 430 Gene3D - 117 416 IPR011989 -
Gabi3340g00001 430 FunFam RING-type E3 ubiquitin transferase 28 99 - -
Gabi3340g00001 430 CDD RING-Ubox_PUB 29 81 IPR045210 -
Gabi3340g00001 430 Pfam U-box domain 28 96 IPR003613 GO:0004842|GO:0016567
Gabi3340g00001 430 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Gabi3340g00001 430 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3340g00001 Gabi-Chr3340 12347 13861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3340g00001 22 429 U-box Gene Family AT5G09800 38.626 4.63e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3340g00001 - - gmx:100786235 574.318