Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3338g00045 ATGCGTGCAAAAGAAGAATCTTTTTCAACCCCTTCAACAGAGTTTATAAAGTTGAAAATCCTTGCAGAGGAGGGTTATGTGAAGATTAATACTGACGGTGCTGCTAGAGGTAATCCTGGATTAGCTGCTTGCGGTAGAGTGTTACGTAATTCTCAAGGTCTTTGGCTGCGAGGTTATGCTATCCGGCTGGGGAGGTGCACAGCTTTCCGAGCCGAGTTGTGGGGAATTTGGCATGGTTTGAAGGAGGCTTGGAATGCAGGTTACAAACACGTCATTATTGAAAGTGATTCCTTAGTGGCAATCACTGGGCTCACCAAAGGGGGTGCAACAGTTCGTGAGGTACGTTTGTTATCTCGTATACGAACATGGATTCAAAAAGATTGGGAGGTGCGGATTTATCACAAATATAAAGAGGAAAATGCTTGTGCAGATTGGATGACTAACTATCTTCTGGATCATACAGATCTAGCGAATCAGATCTTCTTTGAAGAACCACCAGGGGGTATCCATCTGTTATATCTGGCTGATCTTGCATCAGTTGGGAGGGATCGTATTGTTCGTAGTCCTAAAAGTTTGAGAAAGAGTTATCTTGAGAGAAAAATTAATCTTAGTGTTGTAACACTTGTGTTTTATATCAAAGTGGAAATATCCAAACGTCAGCAATCATCTCCCGAATTTCAAGCGATTAATCCTTTCAAGAAACTCCCCGCTATTGTTGATGGAAGGTTCAAACTATTTGAGAGCCATGCAATTCTTATCTATCTTGCTTCTGCCTTTCCTGGAGTTGCAGACCATTGGTACCCAGCTGATATTTCCAGGAGAGCTAAAATTCACTCGGTCTTAGATTGGCATCACCTGAATTTGCATCGTGGGGCAGCCACATTTGTTCTAAATACTGTACTAGCTCCGATATTGGGTCTACCACTAAACCGACAAGCAGCTGTTGAAGCTGAGAACATTTTGATATCATCTCTTTCAAAAATAGAGAACATATGGCTTAAGGGAAATGGTCGGTACTTGCTTGGTGGCCTGCAACTGTCCATAGTCGATCTCAGTCTGGTTTGCGAAATTATGCAATTAGAGCTTTTAGATAAGAAGGATTTTTGGATGCAGCTTTTAGATAAGAAGGATCGTGATCGTATTCTCGGTCCCCACAAGAAAGTTCAGCAGTGGATTGAGAGCACAAGAAATGCAACGAGGCCTCATTTTGATGAAGTTCATAATGTTCTCTATAAGTTGAAAATGAAGTTTTCGATGCAGCAAACTAATCAGGAAGATGGCGGGATGGATGCTAGAAGTGTTTAG 1305 0.4184 MRAKEESFSTPSTEFIKLKILAEEGYVKINTDGAARGNPGLAACGRVLRNSQGLWLRGYAIRLGRCTAFRAELWGIWHGLKEAWNAGYKHVIIESDSLVAITGLTKGGATVREVRLLSRIRTWIQKDWEVRIYHKYKEENACADWMTNYLLDHTDLANQIFFEEPPGGIHLLYLADLASVGRDRIVRSPKSLRKSYLERKINLSVVTLVFYIKVEISKRQQSSPEFQAINPFKKLPAIVDGRFKLFESHAILIYLASAFPGVADHWYPADISRRAKIHSVLDWHHLNLHRGAATFVLNTVLAPILGLPLNRQAAVEAENILISSLSKIENIWLKGNGRYLLGGLQLSIVDLSLVCEIMQLELLDKKDFWMQLLDKKDRDRILGPHKKVQQWIESTRNATRPHFDEVHNVLYKLKMKFSMQQTNQEDGGMDARSV 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3338g00045 434 Pfam Reverse transcriptase-like 30 148 IPR002156 GO:0003676|GO:0004523
Gabi3338g00045 434 CDD GST_C_Theta 273 413 IPR040077 -
Gabi3338g00045 434 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 195 263 IPR004045 -
Gabi3338g00045 434 PANTHER GLUTATHIONE S-TRANSFERASE T1-RELATED 212 425 IPR043377 -
Gabi3338g00045 434 Gene3D - 25 153 IPR036397 GO:0003676
Gabi3338g00045 434 ProSiteProfiles RNase H type-1 domain profile. 23 152 IPR002156 GO:0003676|GO:0004523
Gabi3338g00045 434 SUPERFAMILY GST C-terminal domain-like 264 408 IPR036282 -
Gabi3338g00045 434 CDD RNase_H_like 29 148 IPR044730 -
Gabi3338g00045 434 FunFam Glutathione S-transferase theta-1 264 422 - -
Gabi3338g00045 434 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 270 401 IPR010987 -
Gabi3338g00045 434 Gene3D Glutaredoxin 198 263 - -
Gabi3338g00045 434 Pfam Glutathione S-transferase, N-terminal domain 213 256 IPR004045 -
Gabi3338g00045 434 Gene3D - 264 427 - -
Gabi3338g00045 434 SUPERFAMILY Thioredoxin-like 212 268 IPR036249 -
Gabi3338g00045 434 SFLD Glutathione Transferase (cytosolic) 214 371 IPR040079 -
Gabi3338g00045 434 SUPERFAMILY Ribonuclease H-like 26 152 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3338g00045 Gabi-Chr3338 458867 465347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3338g00045 214 417 Glutathione S-transferase Gene Family AT5G41210 65.686 6.11e-94 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3338g00045 K00799 - gmx:547979 352.829