LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3338g00045	ATGCGTGCAAAAGAAGAATCTTTTTCAACCCCTTCAACAGAGTTTATAAAGTTGAAAATCCTTGCAGAGGAGGGTTATGTGAAGATTAATACTGACGGTGCTGCTAGAGGTAATCCTGGATTAGCTGCTTGCGGTAGAGTGTTACGTAATTCTCAAGGTCTTTGGCTGCGAGGTTATGCTATCCGGCTGGGGAGGTGCACAGCTTTCCGAGCCGAGTTGTGGGGAATTTGGCATGGTTTGAAGGAGGCTTGGAATGCAGGTTACAAACACGTCATTATTGAAAGTGATTCCTTAGTGGCAATCACTGGGCTCACCAAAGGGGGTGCAACAGTTCGTGAGGTACGTTTGTTATCTCGTATACGAACATGGATTCAAAAAGATTGGGAGGTGCGGATTTATCACAAATATAAAGAGGAAAATGCTTGTGCAGATTGGATGACTAACTATCTTCTGGATCATACAGATCTAGCGAATCAGATCTTCTTTGAAGAACCACCAGGGGGTATCCATCTGTTATATCTGGCTGATCTTGCATCAGTTGGGAGGGATCGTATTGTTCGTAGTCCTAAAAGTTTGAGAAAGAGTTATCTTGAGAGAAAAATTAATCTTAGTGTTGTAACACTTGTGTTTTATATCAAAGTGGAAATATCCAAACGTCAGCAATCATCTCCCGAATTTCAAGCGATTAATCCTTTCAAGAAACTCCCCGCTATTGTTGATGGAAGGTTCAAACTATTTGAGAGCCATGCAATTCTTATCTATCTTGCTTCTGCCTTTCCTGGAGTTGCAGACCATTGGTACCCAGCTGATATTTCCAGGAGAGCTAAAATTCACTCGGTCTTAGATTGGCATCACCTGAATTTGCATCGTGGGGCAGCCACATTTGTTCTAAATACTGTACTAGCTCCGATATTGGGTCTACCACTAAACCGACAAGCAGCTGTTGAAGCTGAGAACATTTTGATATCATCTCTTTCAAAAATAGAGAACATATGGCTTAAGGGAAATGGTCGGTACTTGCTTGGTGGCCTGCAACTGTCCATAGTCGATCTCAGTCTGGTTTGCGAAATTATGCAATTAGAGCTTTTAGATAAGAAGGATTTTTGGATGCAGCTTTTAGATAAGAAGGATCGTGATCGTATTCTCGGTCCCCACAAGAAAGTTCAGCAGTGGATTGAGAGCACAAGAAATGCAACGAGGCCTCATTTTGATGAAGTTCATAATGTTCTCTATAAGTTGAAAATGAAGTTTTCGATGCAGCAAACTAATCAGGAAGATGGCGGGATGGATGCTAGAAGTGTTTAG	1305	0.4184	MRAKEESFSTPSTEFIKLKILAEEGYVKINTDGAARGNPGLAACGRVLRNSQGLWLRGYAIRLGRCTAFRAELWGIWHGLKEAWNAGYKHVIIESDSLVAITGLTKGGATVREVRLLSRIRTWIQKDWEVRIYHKYKEENACADWMTNYLLDHTDLANQIFFEEPPGGIHLLYLADLASVGRDRIVRSPKSLRKSYLERKINLSVVTLVFYIKVEISKRQQSSPEFQAINPFKKLPAIVDGRFKLFESHAILIYLASAFPGVADHWYPADISRRAKIHSVLDWHHLNLHRGAATFVLNTVLAPILGLPLNRQAAVEAENILISSLSKIENIWLKGNGRYLLGGLQLSIVDLSLVCEIMQLELLDKKDFWMQLLDKKDRDRILGPHKKVQQWIESTRNATRPHFDEVHNVLYKLKMKFSMQQTNQEDGGMDARSV	434

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3338g00045	434	Pfam	Reverse transcriptase-like	30	148	IPR002156	GO:0003676\|GO:0004523
	Gabi3338g00045	434	CDD	GST_C_Theta	273	413	IPR040077	-
	Gabi3338g00045	434	ProSiteProfiles	Soluble glutathione S-transferase N-terminal domain profile.	195	263	IPR004045	-
	Gabi3338g00045	434	PANTHER	GLUTATHIONE S-TRANSFERASE T1-RELATED	212	425	IPR043377	-
	Gabi3338g00045	434	Gene3D	-	25	153	IPR036397	GO:0003676
	Gabi3338g00045	434	ProSiteProfiles	RNase H type-1 domain profile.	23	152	IPR002156	GO:0003676\|GO:0004523
	Gabi3338g00045	434	SUPERFAMILY	GST C-terminal domain-like	264	408	IPR036282	-
	Gabi3338g00045	434	CDD	RNase_H_like	29	148	IPR044730	-
	Gabi3338g00045	434	FunFam	Glutathione S-transferase theta-1	264	422	-	-
	Gabi3338g00045	434	ProSiteProfiles	Soluble glutathione S-transferase C-terminal domain profile.	270	401	IPR010987	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3338g00045	Gabi-Chr3338	458867	465347	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3338g00045	214	417	Glutathione S-transferase Gene Family	AT5G41210	65.686	6.11e-94	281

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3338g00045	K00799		-	gmx:547979	352.829

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