Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3338g00042 ATGGCGACCAAGTTTTTAGCTTTAGCTTGCTTACGCAATGAAGGTTCAGGGTCAGGGCCGCGACCTCACTACCCATCGATGCCCAGATACCCAAAGGGCATGAAGGTTGAAGAAGGAGCCACCATGGACATGGAGGGTTCAGAGCCCAATAAGGCCCTTTTCTCTGTCATGGGAATGACTTGTTCGGCATGCGCTGCCTCCGTTGAGAAAGCCCTCAAACGCCTTCCTGGCATTCGTGAAGCCCTCGTTGATGTTCTCAACAACCGTGCCCTCGTTCTCTTCTACCCATCTTTCGTTAACGAGGAGACCATTCGCGAAGCCATTGAAGATGCTGGGTTTGAAGCCACGTTACTAAGAGGTGAGACAAATGATCCAACTTTTCAGGTATGTCGCATACGAATCCAAGGAATGACTTGCACCTCGTGTTCCTCCACTGTTGAATCTGCTCTGCAAGCAATTCAAGGTGTGTTGAAAGCACAAGTGGCTTTGGCAACTGAGGAAGCTGAGGTTCACTACAGTCCAAATGTTGTTGGCTACAATCAAATCTTGGAAGCTGTTGAAGACACTGGTTTTGAAGCCACACTTATCAGCACAGGTGAAGACATGAGCAAGATAGACCTTCAGGTTGAAGGTGCAAGGACTGGTCGTTCCATGAGAATGATTGAAGATTCTCTTCAGGCACTTCCAGGGGTTCAAGGTGTTGAAGTCCATCCTGAGTTGAACAAAATATCCCTTTCCTATAAACCAAATTTGACAGGACCCAGGAATTTCATTAATGTCATTGAGGAAACTGGGTCGTCTAGGCGTTTCAGGGCAAAAATATTTCCTGAAGAAGGAGGAGGAAGAAACACACATAGGAGGGAGGAAATTAAGCAATACTATAGATCCTTCTTATGGAGTTTGGTGTTTACTGTTCCTGTGTTTCTAACCTCTATGGTGCTTATGTATATACCCGGAATTAAGCATGGACTGGATGCCAAAGTTGTTAATATGCTTACAGCGGGGATGATTGCAAGATGGGTGCTTGCCACACCAGTGCAGTTCATTATTGGCAAGAGATTTTACTCTGGTGCCTACAAAGCATTACGCCTTGGCTCTCCTAACATGGATGTTTTGATTGCCTTGGGAACAAATGCTGCATATTTCTATTCAGTATATTCTGTCCTGAGAGCTGCTACCTCTCAGGATTTCAAGGGTAATGATTTCTTTGAGACTAGTGCTATGCTTATTTCGTTTATTCTATTGGGAAAGTATCTTGAAGTTTTAGCCAAGGGGAAGACATCCGATGCAATTGCCAAGCTCATGAACTTGACCCCTGACACAGCTATCCTGTTGACCCTGGACAATGAAGGAAACGTTATTAATGAACAAGAAATTGACAGCAGATTGATTCAAAAGAATGATGTGATTAAAATTATTCCTGGGGCAAAAGTAGCTTCAGATGGATTTGTTATATGGGGTCAAAGCCATGTGAATGAGAGCATGATAACAGGTGAGGCACGTCCTGTGGCAAAGAGGAAAGGTGACACTGTTATTGGAGGAACTGTGAATGAGAACGGGGTGTTACATATTAAGGCAACCTGGGTTGGATCAGAGAGTGCTCTTTCCCTGATTGTTAGACTTGTTGAGTCAGCACAGATGGCCAAGGCTCCCGTGCAGAAGTTTGCTGACCGCATTTCCAAATACTTTGTGCCTCTGGTTATTTTAATCTCATTTTCAACTTGGCTTGCCTGGTTTTTAGCTGGAAGATTTCATGCTTACCCAAAGTCTTGGATACCATCTTCCATGGACAGCTTTCAGCTTGCTTTGCAGTTTGGGATTTCTGTCATGGTCATAGCCTGTCCATGTGCTTTAGGTTTAGCAACACCAACTGCTGTTATGGTTGGCACTGGAGTAGGTGCATCTCAGGGGGTACTGATCAAAGGAGGACAAGCATTAGAAAATGCACATAAGGTGAACTGCATTGTTTTTGACAAGACAGGTACTCTCACTATTGGGAAGCCTGTGGTAGTTAATACAAAATTATTAACAAATATGGTACTCCGGGAATTCTATGAACTTGTGGCTGCAGTTGAGGTGAATAGTGAGCATCCACTAGCTAAGGCCATCGTTGAGTATGCAAAAAAACTCAGAGATGAAGAGAACCCTACTTGGCCAGAAGCACGGGATTTTGTCTCCATTACTGGACATGGAGTGAAGGCCACTGTTCGTAACAAGGAAATAATTGTTGGTAACAAGAGTTTGATGGCCGACCACAATGTTGCACTTCCTGTTGATGCTGAAGATATTCTTTCAGAAGCCGAGGGTATGGCTCAAACTGGAATTTTAGTATCTATAAATGGGGAAGTAGTTGGGGTTTTAGCAGTATCTGATCCACTGAAACCGGGTGCTCAAGAAGTCATTTCCATTCTCAAGTCAATGAAAATAAGGAGCATCATGGTGACTGGGGACAACTGGGGTACTGCTAATTCTATAGCAAGGGAAGTTGGAATTGAAACTGTTATTGCTGAAGCCAAACCGGAGTACAAGGCAGAAAAAGTGAAAGACTTGCAGGCTTCTAGGTACAGGGTTGCTATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACATTGCTATTGAGGCTGCTGATATTGTCCTGATGAAGAGTAACTTGGAGGATGTCATAACTGCAATTGACCTTTCCAGAAAAACATTTTCCCGTATCCGCTTGAATTACGTGTGGGCTTTGGGCTATAATCTGCTTGGCATTCCAATAGCTGCTGGAGCTCTTTTCCCTTCTACACGATTTAGGTTGCCACCATGGGTTGCTGGGGCTGCTATGGCTGCCTCTTCTGTCAGCGTTGTCTGCTGTTCTCTACTGTTGAAATATTACAGGAGACCCAAGAAGCTGGACAACCTTGAGATACGGGGCATAAGCATTGAATGA 2970 0.4455 MATKFLALACLRNEGSGSGPRPHYPSMPRYPKGMKVEEGATMDMEGSEPNKALFSVMGMTCSACAASVEKALKRLPGIREALVDVLNNRALVLFYPSFVNEETIREAIEDAGFEATLLRGETNDPTFQVCRIRIQGMTCTSCSSTVESALQAIQGVLKAQVALATEEAEVHYSPNVVGYNQILEAVEDTGFEATLISTGEDMSKIDLQVEGARTGRSMRMIEDSLQALPGVQGVEVHPELNKISLSYKPNLTGPRNFINVIEETGSSRRFRAKIFPEEGGGRNTHRREEIKQYYRSFLWSLVFTVPVFLTSMVLMYIPGIKHGLDAKVVNMLTAGMIARWVLATPVQFIIGKRFYSGAYKALRLGSPNMDVLIALGTNAAYFYSVYSVLRAATSQDFKGNDFFETSAMLISFILLGKYLEVLAKGKTSDAIAKLMNLTPDTAILLTLDNEGNVINEQEIDSRLIQKNDVIKIIPGAKVASDGFVIWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHIKATWVGSESALSLIVRLVESAQMAKAPVQKFADRISKYFVPLVILISFSTWLAWFLAGRFHAYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALENAHKVNCIVFDKTGTLTIGKPVVVNTKLLTNMVLREFYELVAAVEVNSEHPLAKAIVEYAKKLRDEENPTWPEARDFVSITGHGVKATVRNKEIIVGNKSLMADHNVALPVDAEDILSEAEGMAQTGILVSINGEVVGVLAVSDPLKPGAQEVISILKSMKIRSIMVTGDNWGTANSIAREVGIETVIAEAKPEYKAEKVKDLQASRYRVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYVWALGYNLLGIPIAAGALFPSTRFRLPPWVAGAAMAASSVSVVCCSLLLKYYRRPKKLDNLEIRGISIE 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3338g00042 989 Pfam Heavy-metal-associated domain 132 192 IPR006121 GO:0046872
Gabi3338g00042 989 Pfam Heavy-metal-associated domain 54 114 IPR006121 GO:0046872
Gabi3338g00042 989 SUPERFAMILY Calcium ATPase, transmembrane domain M 404 933 IPR023298 -
Gabi3338g00042 989 FunFam Copper-transporting ATPase HMA5 49 119 - -
Gabi3338g00042 989 FunFam Copper-transporting ATPase HMA5 127 198 - -
Gabi3338g00042 989 ProSitePatterns Heavy-metal-associated domain. 134 163 IPR017969 GO:0046872
Gabi3338g00042 989 Gene3D - 741 791 IPR023299 GO:0000166
Gabi3338g00042 989 Gene3D - 663 740 IPR023299 GO:0000166
Gabi3338g00042 989 SUPERFAMILY HMA, heavy metal-associated domain 198 267 IPR036163 GO:0046872
Gabi3338g00042 989 CDD HMA 221 265 IPR006121 GO:0046872
Gabi3338g00042 989 Gene3D - 623 917 IPR023214 -
Gabi3338g00042 989 ProSitePatterns Heavy-metal-associated domain. 56 85 IPR017969 GO:0046872
Gabi3338g00042 989 FunFam Probable copper-transporting ATPase HMA5 775 917 - -
Gabi3338g00042 989 SUPERFAMILY HAD-like 655 966 IPR036412 -
Gabi3338g00042 989 PRINTS Copper-transporting ATPase 1 signature 152 173 - -
Gabi3338g00042 989 PRINTS Copper-transporting ATPase 1 signature 51 76 - -
Gabi3338g00042 989 PRINTS Copper-transporting ATPase 1 signature 106 126 - -
Gabi3338g00042 989 PRINTS Copper-transporting ATPase 1 signature 77 100 - -
Gabi3338g00042 989 NCBIfam heavy metal translocating P-type ATPase 369 969 IPR027256 GO:0006812|GO:0016020|GO:0019829
Gabi3338g00042 989 SUPERFAMILY HMA, heavy metal-associated domain 47 119 IPR036163 GO:0046872
Gabi3338g00042 989 Pfam haloacid dehalogenase-like hydrolase 652 874 - -
Gabi3338g00042 989 Gene3D - 424 546 - -
Gabi3338g00042 989 SUPERFAMILY HMA, heavy metal-associated domain 126 198 IPR036163 GO:0046872
Gabi3338g00042 989 SUPERFAMILY Calcium ATPase, transduction domain A 456 542 IPR008250 -
Gabi3338g00042 989 ProSiteProfiles Heavy-metal-associated domain profile. 128 194 IPR006121 GO:0046872
Gabi3338g00042 989 Pfam E1-E2 ATPase 451 634 - -
Gabi3338g00042 989 ProSiteProfiles Heavy-metal-associated domain profile. 203 269 IPR006121 GO:0046872
Gabi3338g00042 989 Gene3D - 203 265 - -
Gabi3338g00042 989 FunFam Copper-transporting ATPase 1, putative 424 546 - -
Gabi3338g00042 989 SFLD p-type atpase 638 912 IPR044492 -
Gabi3338g00042 989 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 985 - -
Gabi3338g00042 989 CDD HMA 132 194 IPR006121 GO:0046872
Gabi3338g00042 989 NCBIfam HAD-IC family P-type ATPase 409 941 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3338g00042 989 NCBIfam copper ion binding protein 53 115 IPR006122 GO:0005507
Gabi3338g00042 989 NCBIfam copper ion binding protein 132 193 IPR006122 GO:0005507
Gabi3338g00042 989 CDD HMA 54 116 IPR006121 GO:0046872
Gabi3338g00042 989 ProSiteProfiles Heavy-metal-associated domain profile. 50 116 IPR006121 GO:0046872
Gabi3338g00042 989 CDD P-type_ATPase_Cu-like 295 970 - -
Gabi3338g00042 989 Gene3D - 49 120 - -
Gabi3338g00042 989 Gene3D - 128 200 - -
Gabi3338g00042 989 PRINTS P-type cation-transporting ATPase superfamily signature 656 670 - -
Gabi3338g00042 989 PRINTS P-type cation-transporting ATPase superfamily signature 807 817 - -
Gabi3338g00042 989 PRINTS P-type cation-transporting ATPase superfamily signature 492 506 - -
Gabi3338g00042 989 PRINTS P-type cation-transporting ATPase superfamily signature 860 879 - -
Gabi3338g00042 989 PRINTS P-type cation-transporting ATPase superfamily signature 785 796 - -
Gabi3338g00042 989 PRINTS P-type cation-transporting ATPase superfamily signature 883 895 - -
Gabi3338g00042 989 ProSitePatterns E1-E2 ATPases phosphorylation site. 658 664 IPR018303 -
Gabi3338g00042 989 SFLD Haloacid Dehalogenase 638 912 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3338g00042 Gabi-Chr3338 424284 428595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3338g00042 1 989 Primary Pumps ATPases AT1G63440 76.606 0.0 1540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3338g00042 K17686 - gmx:100810141 1734.54