Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi3338g00027 | ATGCGGTGGTCGATGATTCGGGAAGGGCGGAAGGCATGGTGGAACTTGACGGTGGTTCGTAACATGGGCGGTGGTCCTCGCACTTTTCCGGGGGGAGTAAACAAGTGGAAGTGGAAGCGGATGCACGAGAAGAGAGCCAAAGATAAAGAGCAGAGGCTTCTCGACCAAGAGAAGCAACTTTACGAGGCTCGCATTCGCTCCCACATCCGCTCCACCGTCTCACCTCCTTCTTCCACCGCCGCCGCCGCTACTCACAGCCCCATTACTCCACACGACCATATCAAGTCTCTCGCCAATCGCTTTATGACAGAAGGCGCCGAAGATCTCTGGAACAACGACGACGGTCCCTTAACCCTAACCCCAACCCCAACCCCAACCCCAATCCCATCGCCGCCGGTGAATTTGCGCAAACTGATAACCCAACCTTCGAATCGGAATTTAACGAATTATACGCAGACTAGGGATTACAGTTCTGCTCTTCAGGTTAGAAATGTGGCTATCGGCAGCAGCAAGCGGAGATTTTGGAGAAACGATAATGATTCTTCTTCCAGTGAGAGTGAGAATGAAATGGAATGTGAGAGCAACTATTCGAAGATGGGTAGTAGTGCTTCTTTGGGGAATTACGATGTGAAGAGGGAGAAGAGGGTGATGCCAAAGTCACACGACGATGGAAGTGATCTTTCGCAGCAGGTTGAGTTGATCAAGTTTCAACTTAATCACAGGAAGTTGACCCAGAATGAGGAGCACCACGGTGAGGGTGAGGAACAACAAAGCATCCTAAGTCAGACAAGATTTGACCAGTGTGGTATATCGCCGTTGACAGTCAAGGCACTTTCTTCTGCTGGTTATATTCATATGACCCGGGTACAAGAGGCTAGCGTCAAAATTTGCCTTGATGGTATGGATGCTTTAGTCAAAGCTAAAACTGGCACAGGGAAAAGTGCAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGTGTAGCAATACCTCTCAACGTGTGCCTCCAATACTTGTTCTAGTTCTCTGCCCCACCAGAGAACTTGCTAGTCAAATTGCTGCTGAAGCAAAGGTTATACTGAAATACCACAATGGCATTGGGGTGCAGACTCTAGTAGGAGGTGTACGATTTAAAGTTGACCAAAAACGCCTTGAATCAGATCCATGTCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTGTACGATTAATGGGCTTGCAGATGCTTGTACTTGATGAAGCAGATCATTTACTGGACCTAGGATTTCGAAAGGATATAGAAAAAATTGTTGATTGTTTGCCCCGTCAAAGACAATCCTTGCTGTTTTCGGCAACCATCCCAAAGGAGGTCCGTCGTATATCTCAGCTTGTTTTGAAAAGGGAACACACATTTGTCGATACAGTTGGAATGGGTTGTGTGGAAACTCCTGTCCAGGTAAAGCAATCTTATCTTATTGCCCCACATGAATCACATTTTCAAATAGTATACAATATTCTGAAGGAGCATATCTTGCAAGCACCTGATTATAAGGTTATTGTTTTCTGTATAACTGGGATGGTTACATCTCTCATGTATCACCTTCTCCGGGAAATGAAAATGAATGTTAGGGAGATACATTCTCGAAAACCTCAGCTCTATCGAGCTCGCATATCAGATGAGTTCAGGCAATCCAGACAACTGGTTCTTGTCTCATCTGATGTTTCATCACGTGGAATGAATTATCCTGATGTTACTTTAGTCATACAGGTGGGAATTCCTCCTGACCGTGAACAATATATACATCGTCTTGGAAGAACAGGACGAGAAGGCAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAGAGTATTTTTTAGATGAAATCAAGGATCTCCCTCTAAAGAAATTCCACTTACCAGATATAGATCCACAGACAAAGCTTAAGGTTGAGCGTTCAATGGCAAAGATTGATAATGACATCAAAGAAGCAGCTTATCATGCTTGGCTTGGTTATTATAACTCCATCAGGGAAATTGGGAGGGAGAAGACCACTATAGCTGAGCTGGCAAGCCAATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTATTCCGAAAAACTGCACTAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGATAG | 2199 | 0.447 | MRWSMIREGRKAWWNLTVVRNMGGGPRTFPGGVNKWKWKRMHEKRAKDKEQRLLDQEKQLYEARIRSHIRSTVSPPSSTAAAATHSPITPHDHIKSLANRFMTEGAEDLWNNDDGPLTLTPTPTPTPIPSPPVNLRKLITQPSNRNLTNYTQTRDYSSALQVRNVAIGSSKRRFWRNDNDSSSSESENEMECESNYSKMGSSASLGNYDVKREKRVMPKSHDDGSDLSQQVELIKFQLNHRKLTQNEEHHGEGEEQQSILSQTRFDQCGISPLTVKALSSAGYIHMTRVQEASVKICLDGMDALVKAKTGTGKSAAFLLPAIETVLKAMCSNTSQRVPPILVLVLCPTRELASQIAAEAKVILKYHNGIGVQTLVGGVRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISVRLMGLQMLVLDEADHLLDLGFRKDIEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHTFVDTVGMGCVETPVQVKQSYLIAPHESHFQIVYNILKEHILQAPDYKVIVFCITGMVTSLMYHLLREMKMNVREIHSRKPQLYRARISDEFRQSRQLVLVSSDVSSRGMNYPDVTLVIQVGIPPDREQYIHRLGRTGREGKEGEGILLIAPWEEYFLDEIKDLPLKKFHLPDIDPQTKLKVERSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTIAELASQFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR | 732 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi3338g00027 | 732 | PANTHER | RNA HELICASE | 222 | 661 | - | - | |
Gabi3338g00027 | 732 | MobiDBLite | consensus disorder prediction | 174 | 210 | - | - | |
Gabi3338g00027 | 732 | SMART | helicmild6 | 535 | 616 | IPR001650 | - | |
Gabi3338g00027 | 732 | Pfam | DEAD/DEAH box helicase | 287 | 465 | IPR011545 | GO:0003676|GO:0005524 | |
Gabi3338g00027 | 732 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 318 | 413 | - | - | |
Gabi3338g00027 | 732 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 263 | 291 | IPR014014 | GO:0003724 | |
Gabi3338g00027 | 732 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 340 | 633 | IPR027417 | - | |
Gabi3338g00027 | 732 | Pfam | Helicase conserved C-terminal domain | 507 | 615 | IPR001650 | - | |
Gabi3338g00027 | 732 | Gene3D | - | 240 | 479 | IPR027417 | - | |
Gabi3338g00027 | 732 | SMART | ultradead3 | 282 | 493 | IPR014001 | - | |
Gabi3338g00027 | 732 | MobiDBLite | consensus disorder prediction | 188 | 204 | - | - | |
Gabi3338g00027 | 732 | Coils | Coil | 39 | 59 | - | - | |
Gabi3338g00027 | 732 | Gene3D | - | 487 | 711 | IPR027417 | - | |
Gabi3338g00027 | 732 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 294 | 477 | IPR014001 | - | |
Gabi3338g00027 | 732 | MobiDBLite | consensus disorder prediction | 70 | 85 | - | - | |
Gabi3338g00027 | 732 | MobiDBLite | consensus disorder prediction | 70 | 90 | - | - | |
Gabi3338g00027 | 732 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 503 | 661 | IPR001650 | - | |
Gabi3338g00027 | 732 | CDD | SF2_C_DEAD | 492 | 625 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi3338g00027 | Gabi-Chr3338 | 309781 | 314017 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi3338g00027 | 263 | 641 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 28.250 | 2.27e-42 | 157 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi3338g00027 | - | - | gmx:100808520 | 1077 |