Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3338g00027 ATGCGGTGGTCGATGATTCGGGAAGGGCGGAAGGCATGGTGGAACTTGACGGTGGTTCGTAACATGGGCGGTGGTCCTCGCACTTTTCCGGGGGGAGTAAACAAGTGGAAGTGGAAGCGGATGCACGAGAAGAGAGCCAAAGATAAAGAGCAGAGGCTTCTCGACCAAGAGAAGCAACTTTACGAGGCTCGCATTCGCTCCCACATCCGCTCCACCGTCTCACCTCCTTCTTCCACCGCCGCCGCCGCTACTCACAGCCCCATTACTCCACACGACCATATCAAGTCTCTCGCCAATCGCTTTATGACAGAAGGCGCCGAAGATCTCTGGAACAACGACGACGGTCCCTTAACCCTAACCCCAACCCCAACCCCAACCCCAATCCCATCGCCGCCGGTGAATTTGCGCAAACTGATAACCCAACCTTCGAATCGGAATTTAACGAATTATACGCAGACTAGGGATTACAGTTCTGCTCTTCAGGTTAGAAATGTGGCTATCGGCAGCAGCAAGCGGAGATTTTGGAGAAACGATAATGATTCTTCTTCCAGTGAGAGTGAGAATGAAATGGAATGTGAGAGCAACTATTCGAAGATGGGTAGTAGTGCTTCTTTGGGGAATTACGATGTGAAGAGGGAGAAGAGGGTGATGCCAAAGTCACACGACGATGGAAGTGATCTTTCGCAGCAGGTTGAGTTGATCAAGTTTCAACTTAATCACAGGAAGTTGACCCAGAATGAGGAGCACCACGGTGAGGGTGAGGAACAACAAAGCATCCTAAGTCAGACAAGATTTGACCAGTGTGGTATATCGCCGTTGACAGTCAAGGCACTTTCTTCTGCTGGTTATATTCATATGACCCGGGTACAAGAGGCTAGCGTCAAAATTTGCCTTGATGGTATGGATGCTTTAGTCAAAGCTAAAACTGGCACAGGGAAAAGTGCAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGTGTAGCAATACCTCTCAACGTGTGCCTCCAATACTTGTTCTAGTTCTCTGCCCCACCAGAGAACTTGCTAGTCAAATTGCTGCTGAAGCAAAGGTTATACTGAAATACCACAATGGCATTGGGGTGCAGACTCTAGTAGGAGGTGTACGATTTAAAGTTGACCAAAAACGCCTTGAATCAGATCCATGTCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTGTACGATTAATGGGCTTGCAGATGCTTGTACTTGATGAAGCAGATCATTTACTGGACCTAGGATTTCGAAAGGATATAGAAAAAATTGTTGATTGTTTGCCCCGTCAAAGACAATCCTTGCTGTTTTCGGCAACCATCCCAAAGGAGGTCCGTCGTATATCTCAGCTTGTTTTGAAAAGGGAACACACATTTGTCGATACAGTTGGAATGGGTTGTGTGGAAACTCCTGTCCAGGTAAAGCAATCTTATCTTATTGCCCCACATGAATCACATTTTCAAATAGTATACAATATTCTGAAGGAGCATATCTTGCAAGCACCTGATTATAAGGTTATTGTTTTCTGTATAACTGGGATGGTTACATCTCTCATGTATCACCTTCTCCGGGAAATGAAAATGAATGTTAGGGAGATACATTCTCGAAAACCTCAGCTCTATCGAGCTCGCATATCAGATGAGTTCAGGCAATCCAGACAACTGGTTCTTGTCTCATCTGATGTTTCATCACGTGGAATGAATTATCCTGATGTTACTTTAGTCATACAGGTGGGAATTCCTCCTGACCGTGAACAATATATACATCGTCTTGGAAGAACAGGACGAGAAGGCAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAGAGTATTTTTTAGATGAAATCAAGGATCTCCCTCTAAAGAAATTCCACTTACCAGATATAGATCCACAGACAAAGCTTAAGGTTGAGCGTTCAATGGCAAAGATTGATAATGACATCAAAGAAGCAGCTTATCATGCTTGGCTTGGTTATTATAACTCCATCAGGGAAATTGGGAGGGAGAAGACCACTATAGCTGAGCTGGCAAGCCAATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTATTCCGAAAAACTGCACTAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGATAG 2199 0.447 MRWSMIREGRKAWWNLTVVRNMGGGPRTFPGGVNKWKWKRMHEKRAKDKEQRLLDQEKQLYEARIRSHIRSTVSPPSSTAAAATHSPITPHDHIKSLANRFMTEGAEDLWNNDDGPLTLTPTPTPTPIPSPPVNLRKLITQPSNRNLTNYTQTRDYSSALQVRNVAIGSSKRRFWRNDNDSSSSESENEMECESNYSKMGSSASLGNYDVKREKRVMPKSHDDGSDLSQQVELIKFQLNHRKLTQNEEHHGEGEEQQSILSQTRFDQCGISPLTVKALSSAGYIHMTRVQEASVKICLDGMDALVKAKTGTGKSAAFLLPAIETVLKAMCSNTSQRVPPILVLVLCPTRELASQIAAEAKVILKYHNGIGVQTLVGGVRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISVRLMGLQMLVLDEADHLLDLGFRKDIEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHTFVDTVGMGCVETPVQVKQSYLIAPHESHFQIVYNILKEHILQAPDYKVIVFCITGMVTSLMYHLLREMKMNVREIHSRKPQLYRARISDEFRQSRQLVLVSSDVSSRGMNYPDVTLVIQVGIPPDREQYIHRLGRTGREGKEGEGILLIAPWEEYFLDEIKDLPLKKFHLPDIDPQTKLKVERSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTIAELASQFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR 732
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi3338g00027 732 PANTHER RNA HELICASE 222 661 - -
Gabi3338g00027 732 MobiDBLite consensus disorder prediction 174 210 - -
Gabi3338g00027 732 SMART helicmild6 535 616 IPR001650 -
Gabi3338g00027 732 Pfam DEAD/DEAH box helicase 287 465 IPR011545 GO:0003676|GO:0005524
Gabi3338g00027 732 FunFam Putative LRR receptor-like serine/threonine-protein kinase 318 413 - -
Gabi3338g00027 732 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 263 291 IPR014014 GO:0003724
Gabi3338g00027 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 633 IPR027417 -
Gabi3338g00027 732 Pfam Helicase conserved C-terminal domain 507 615 IPR001650 -
Gabi3338g00027 732 Gene3D - 240 479 IPR027417 -
Gabi3338g00027 732 SMART ultradead3 282 493 IPR014001 -
Gabi3338g00027 732 MobiDBLite consensus disorder prediction 188 204 - -
Gabi3338g00027 732 Coils Coil 39 59 - -
Gabi3338g00027 732 Gene3D - 487 711 IPR027417 -
Gabi3338g00027 732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 294 477 IPR014001 -
Gabi3338g00027 732 MobiDBLite consensus disorder prediction 70 85 - -
Gabi3338g00027 732 MobiDBLite consensus disorder prediction 70 90 - -
Gabi3338g00027 732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 661 IPR001650 -
Gabi3338g00027 732 CDD SF2_C_DEAD 492 625 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi3338g00027 Gabi-Chr3338 309781 314017 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3338g00027 263 641 Eukaryotic Initiation Factors Gene Family AT3G19760 28.250 2.27e-42 157
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3338g00027 - - gmx:100808520 1077