Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3338g00023 ATGCCTCAGGGAAGCCTTGAAGTTGTTCTTGTCAGTGCCAAGGGCCTTGAGAATACCGATTTTATACTTAACATGGATCCCTATGTGATCCTTATATGCCGCACTCAGGAGCAACAAAGCAGTGTTGCATCAGGTCATGGAAGTGAACCGGAGTGGAATGAGAATTTTGTATTCAATGTGTCTGAAGGTGTTAACGAACTCAGATTGAAGATCATGGACAGTGATACCGGAACGGCACATGATTTCGTAGGAGAAGCTACGATTCCATTGGATGCGTTGTTTACTGAAGGAAGCATCCCACCCGTGGCATACAATGTTGTCAAGGATGGCCACTACTGTGGAGAGATTAGAGTTGGCCTTACTTTCACACACGAGGATCGCAGAGAACGGTCAGAGGAAAGTTTTGGTGGATGGAAGGAGTCTGGTTACTGA 432 0.4606 MPQGSLEVVLVSAKGLENTDFILNMDPYVILICRTQEQQSSVASGHGSEPEWNENFVFNVSEGVNELRLKIMDSDTGTAHDFVGEATIPLDALFTEGSIPPVAYNVVKDGHYCGEIRVGLTFTHEDRRERSEESFGGWKESGY 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3338g00023 143 SMART C2_3c 5 102 IPR000008 -
Gabi3338g00023 143 PANTHER C2 DOMAIN-CONTAINING 1 126 - -
Gabi3338g00023 143 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 124 IPR035892 -
Gabi3338g00023 143 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Gabi3338g00023 143 Gene3D C2 domain 2 124 IPR035892 -
Gabi3338g00023 143 Pfam C2 domain 4 96 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3338g00023 Gabi-Chr3338 263302 265521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3338g00023 4 97 C2H2 Transcription Factor Family AT4G21160 31.915 7.99e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3338g00023 - - gmx:100782974 251.906