Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3338g00013 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTAACTGCAGTGGATCAGGCAACCTTGCCCAACATAGAAACAATGGATGAGTCAAGCAGATTTGGTGTTTATAGAACGAAAGGAGAATTTTCATTTGATTTGAAGCTTGGCCAGGTGGGAAATTCTGGCACCGAATCAGTGTTAACCAAGTCCAAAGATGGTGCTGGAGTCTCCAAAATAACATCATCATCTTCAGGTTCATCTAAGAGAGCTCGAGCCATTAACAACGGGAACCAGACAGTGTCATGCCTTGTGGATGGATGTCATTCAGATCTTAGTAATTGTAGGGATTATCATAGGCGCCATAAGGTCTGTGAACTCCATTCCAAGACTGCGCAGGTCACAATTGGTGGCCACAACCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTAGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGGAAACGCTTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAGCCAGAACCTCTCACGCGATCTGGTAGTTTTTTGTCCAATTACCAAGGTAGCCAATTGCTACCCTTTTCAAGTTCACATGTGTACCCTTCCACTGCTGTGGTGAATCCTGCATGGGGTGGAGGAGTTGTCACTTCGTGTGCAGATGTTAGGCTTCAATGCCACAACCAACACCAACAAGTGCATTTGGTTGAAAAACAAGACCTTTTTCTTGGATCTTCTCAAACCAGCTATAACGAAGGGAAGCAAGTGGCATTCATACAAGGTGACCATAACCAAAATACACATGTTCCACCAGCTACTTCCTTGAGCCAAACTTTTTTCAGGACAAGCCCTTTTTCAGAAAGTGGAGGGCTGAGATGCAAAATGTTTTGTGATAGCATAACAAGTTCGGTCCATGACTCCTCCTCTTGTGCTCTCTCTCTTCTGTCATCACCACAGACGCACAATCCTGGAAATGGATTAAACCAAATGGTGAACACACACTCATCCCTTATGCAACCTTTAGGCCTGAGCCTGCATGATAACAACTTGGGGTCCGTGGACCCAGTTTTGGGTCCCAATGGGAGTGACCACCATTGTTCCTCAATGTATAATATTGGTTCTAATGGATCGCAGGGGAATGAAGCCCCTCTACTCTTTCCCTTTCAATGGGAATAG 1164 0.4527 MDWNLKAPSWDLTAVDQATLPNIETMDESSRFGVYRTKGEFSFDLKLGQVGNSGTESVLTKSKDGAGVSKITSSSSGSSKRARAINNGNQTVSCLVDGCHSDLSNCRDYHRRHKVCELHSKTAQVTIGGHNQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGSQLLPFSSSHVYPSTAVVNPAWGGGVVTSCADVRLQCHNQHQQVHLVEKQDLFLGSSQTSYNEGKQVAFIQGDHNQNTHVPPATSLSQTFFRTSPFSESGGLRCKMFCDSITSSVHDSSSCALSLLSSPQTHNPGNGLNQMVNTHSSLMQPLGLSLHDNNLGSVDPVLGPNGSDHHCSSMYNIGSNGSQGNEAPLLFPFQWE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3338g00013 387 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Gabi3338g00013 387 MobiDBLite consensus disorder prediction 158 178 - -
Gabi3338g00013 387 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 51 363 IPR044817 GO:0003677
Gabi3338g00013 387 Gene3D - 85 155 IPR036893 GO:0003677|GO:0005634
Gabi3338g00013 387 SUPERFAMILY SBT domain 92 173 IPR036893 GO:0003677|GO:0005634
Gabi3338g00013 387 FunFam Squamosa promoter-binding-like protein 14 85 155 - -
Gabi3338g00013 387 Pfam SBP domain 94 167 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3338g00013 Gabi-Chr3338 161950 164462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3338g00013 1 387 SBP-box Gene Family AT5G50670 45.297 1.05e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi3338g00013 SBP 6.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3338g00013 - - gmx:100806507 591.652