Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3335g00038 ATGGGTAATTGCTGCGCAGCCCCTCCTTCGGGTTCTCGCGACGAGACAACAACGAAGAAGAAGAAAGGGAAGAAGGAAAAGGAAAACCCTTTCGCGATCGATTACGGCTTCAACACCACCAACAACGGGAAGGGACCGAAACTCACCGTTTTGAAGGACCCAACGGGGAGCGAGATCGAGGTTCGGTACGAGCTGGGTCGCGAGTTGGGTCGGGGCGAGTTCGGGATAACGTACCTTTGCACGGATAAGGAAACCGGAGAGGAGTTAGCTTGCAAATCGATATCGAAGAAGAAGCTGAGAACCGCAATCGACATCGAAGATGTGAGGAGAGAGGTTGAGATCATGAGGCACTTGCCAAAACACCCTAACATCGTTACTTTAAAGGATACCTATGAAGACGACAATGCCGTTCACCTTGTCATGGAGCTCTGCGAGGGTGGAGAGCTCTTCGATCGCATCGTCGCACGTGGCCACTACACCGAACGCGCCGCCGCCGCCGTCACCAAGACCATCGTTGAAGTCGTCCAGATGTGCCACAAACATGGTGTTATGCATCGGGATCTTAAGCCTGAGAACTTTTTGTTTGCAAATAAGAAGGAAACAGCAGCTCTGAAGGCTATAGATTTTGGATTGTCAGTGTTCTTTAAACCAGGGCAAAGATTTGATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTGAAGCGAAATTATGGCCCAGAAGTAGATATTTGGAGTGCTGGAGTAATTCTATACATCTTACTCTGTGGTGTCCCACCATTTTGGGCAGAAACCGAACAAGGAGTTGCACAAGCAATTATTCGATCTGTTGTCGATTTCAAAAGGGACCCATGGCCAAAAGTTTCTGATAATGCGAAAGACCTTGTGAAGAAGATGCTAGATCCTGACCCGAAGCGGCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTACAAAATGCAAAGAAAGCACCTAATGTTTCATTAGGAGAAACTGTTAAAGCAAGGCTCAAGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTGAGGGTGATTGCAGAGCATTTGTCAGTAGAAGAAGCTGCTGGAATAAAAGAGGGATTTCAGCTTATGGATACAGGCAACAAAGGCAAGATCAACATTGATGAACTACGAATAGGGTTGCATAAACTAGGCCATCAAATTCCTGATGCAGATCTCCAAATTCTTATGGAAGCTGGTGATGTAGATAAGGATGGGCACCTAGATTATGGAGAGTTTGTAGCCATTTCTGTTCATCTGAGAAAGATGGGAAATGATGAGCACCTTCGTAAAGCCTTCCAATTTTTTGATGAGAACCAAAGTGGGTATATTGAAATTGAGGAACTGCGTAAAGCCTTGTGTGATGAGGTTGACGAAAACAGTGAAGAAGTTATTAATGCAATTATGCATGATGTGGACACGGATAAGGATGGAATGATAAGTTATGAGGAATTTGCTACAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCTAGGCAGTATTCGCGAGAGAGGTTTAACAGTCTCAGCCTGAAATTGATGAAGGACGGGTCATTGCAATTAAACAATGAAAAACAATGA 1620 0.4488 MGNCCAAPPSGSRDETTTKKKKGKKEKENPFAIDYGFNTTNNGKGPKLTVLKDPTGSEIEVRYELGRELGRGEFGITYLCTDKETGEELACKSISKKKLRTAIDIEDVRREVEIMRHLPKHPNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGQRFDEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNAKKAPNVSLGETVKARLKQFSVMNKLKKRALRVIAEHLSVEEAAGIKEGFQLMDTGNKGKINIDELRIGLHKLGHQIPDADLQILMEAGDVDKDGHLDYGEFVAISVHLRKMGNDEHLRKAFQFFDENQSGYIEIEELRKALCDEVDENSEEVINAIMHDVDTDKDGMISYEEFATMMKAGTDWRKASRQYSRERFNSLSLKLMKDGSLQLNNEKQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3335g00038 539 FunFam Calcium-dependent protein kinase 1 65 148 - -
Gabi3335g00038 539 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Gabi3335g00038 539 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Gabi3335g00038 539 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Gabi3335g00038 539 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 497 - -
Gabi3335g00038 539 FunFam calcium-dependent protein kinase 13 149 329 - -
Gabi3335g00038 539 SUPERFAMILY Protein kinase-like (PK-like) 62 329 IPR011009 -
Gabi3335g00038 539 Gene3D Transferase(Phosphotransferase) domain 1 149 329 - -
Gabi3335g00038 539 SMART serkin_6 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3335g00038 539 MobiDBLite consensus disorder prediction 1 26 - -
Gabi3335g00038 539 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Gabi3335g00038 539 ProSiteProfiles Protein kinase domain profile. 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3335g00038 539 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Gabi3335g00038 539 CDD STKc_CAMK 62 320 - -
Gabi3335g00038 539 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Gabi3335g00038 539 Pfam EF-hand domain pair 439 502 IPR002048 GO:0005509
Gabi3335g00038 539 SUPERFAMILY EF-hand 350 528 IPR011992 -
Gabi3335g00038 539 Pfam Protein kinase domain 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3335g00038 539 CDD EFh 440 502 IPR002048 GO:0005509
Gabi3335g00038 539 Gene3D - 330 504 - -
Gabi3335g00038 539 Pfam EF-hand domain pair 381 430 IPR002048 GO:0005509
Gabi3335g00038 539 FunFam Calcium-dependent protein kinase 7 330 505 - -
Gabi3335g00038 539 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Gabi3335g00038 539 SMART efh_1 368 396 IPR002048 GO:0005509
Gabi3335g00038 539 SMART efh_1 404 432 IPR002048 GO:0005509
Gabi3335g00038 539 SMART efh_1 440 468 IPR002048 GO:0005509
Gabi3335g00038 539 SMART efh_1 476 504 IPR002048 GO:0005509
Gabi3335g00038 539 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Gabi3335g00038 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Gabi3335g00038 539 Gene3D Phosphorylase Kinase; domain 1 65 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3335g00038 Gabi-Chr3335 475149 479850 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3335g00038 1 537 EF-hand Containing Proteins AT5G19450 80.483 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi3335g00038 Pkinase 4.8e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3335g00038 K13412 - gmx:100790745 961.829