Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3335g00031 ATGTGCTGTGAGTTGGAGCGGTTAAAGCCTGCACCGTCTCCATCGCTATCTCCTGTTTTGATACCAACATCTGAACCCAGAAACCACAAGATGAATCACTTTATTGTTGACACTGAAGATTCTTTTGCAAGCTTGCTTGAGCTTGCGGCCAATAATGATGTTGAAGGTTTCAAACGATTGATTGAGTGTGATCCTTCCTCTGTTGATGAGGTTGGGCTATGGTATGGTCGTAGGAAGGGATCAAAGCAGATGGTCAATGAGCAAAGAACGCCTTTGATGGTTGCTGCTACTTATGGTAGCATTGATATTATGAAACTTATTCTTTCTCTATCTGATGCTGACATCAACCAGCCATGTGGCCTTGACAGGAGCACTGCCCTTCATTGTGCGGCATCAGGTGGGGCTGAGAATGCTGTTGATGCCGTGAAACTGCTTCTAGCAGCTGGGGCTGATCCGAATTCTGTGGATTCCAATGGCCATCGTCCTGTAGATGTTATTGTTTTTCCTCCTAAGCTTGAATATGTCAAAAACAGTCTTGAAGAGCTTCTTCAAACTGATGATTCTATTGCTGGGTGTAATCTTAGGGTGATAACACCCTCATTCAATGCATATTCTCCACCATCATCAACTTCACCAGATAACGGATCTCCTTCTGCACGAGATTTCCAGTTGAAGTTAAAGTCAAATGATGTCCCTATTTCTTCTGCATCTGAGAAGAAAGAATATCCTGTTGATCCATCCCTTCCGGACATCAAGAACAGCATATATTCAACTGATGAATTTCGAATGTACTCTTTCAAGGTTCGACCTTGTTCCCGTGCTTATTCACATGATTGGACTGAATGCCCTTTTGTCCATCCGGGGGAGAATGCTCGGAGAAGGGATCCCAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGAGTTCCGGAAGGGTGCTTGCCGGCGAGGAGATATGTGTGAATATGCTCATGGGGTTTTTGAGTGTTGGCTGCATCCAGCACAATATCGAACCCGTCTTTGCAAGGATGGGACAAGTTGCTCCAGAAGAGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGACCATTATATGTTTCAACTGGTTCTGCTGTTCCCTCTCCTCGATCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCCCCTTCCTCAATGTCTGTTATGTCTCCTTCACCATTCACTCCACCCATGTCACCCTCTGGCAATGGCATTTCACACTCTTCTGTTGCTTGGTCCCAGCCTAACATCCCAGCCTTGCATCTTCCAGGAAGTAATCTTCAGTCCAGTCGTTTGAGATCATCACTCCATGCTAGAGATATTCCCATGGATGATTTTGACTCGTTACCTGATTATGATCTGCAGCTACAGCTCCTTAACGAGTTATCATGCCTTTCTCCACAGCCTATGAATTCTAATGCTATAAACCGCTCTGGTCGCATGAAACCCTTGACTCCTTCAAATCTTGATGATCTCTTTTCTGCTGAGAATTCTTCCCCTCGATATGCTGATCCAACACTGACTTCAACTGTTTTTTCTCCTACTCACAAATCAGCTGTCTTCAATCAGTTTCAGCAGCAGCAAAGCTTGTTGTCACCAGTGAATACAAATTTTTCTTCTAAAAATGTTGAACATCCTTTAATGCAGGCCTCAGGAAGAATGTCACCACGAAATGTGGAACCTATTTCTCCAATGAGCTCTAGGATTTCTATGCTAGCTCAACGTGAGAAGCAGCAACAATTTCGAAGCCTGAGCTCCCGGGAACTTGGCTCCAACTCTGCTGCTGCAGCTGCTGCCTCAGTCAATTCTTGGTCAAAATGGGGATCCCCCAATGGTAAGTTGGATTGGGCAGTTGGTACAGATGATCTAGGTAAGCTACGTAGATCATCTTCATTTGAGCTTGGGAACAATGGTGAGGAGCCTGATTTATCATGGGTGCAGTCACTTGTTAAAGAATCTCCAACTGAGATGAAAGAGAAATTGGCAACTACTGTCTCAAGTGTTGCAGCAGCAGCAGCTGGATCCTCCAGTGAGGTATCAAATATGAGCACACAAATGGAGTCTGTTGATCATGCTGTATTGGGAGCATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2175 0.4515 MCCELERLKPAPSPSLSPVLIPTSEPRNHKMNHFIVDTEDSFASLLELAANNDVEGFKRLIECDPSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSIDIMKLILSLSDADINQPCGLDRSTALHCAASGGAENAVDAVKLLLAAGADPNSVDSNGHRPVDVIVFPPKLEYVKNSLEELLQTDDSIAGCNLRVITPSFNAYSPPSSTSPDNGSPSARDFQLKLKSNDVPISSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSGNGISHSSVAWSQPNIPALHLPGSNLQSSRLRSSLHARDIPMDDFDSLPDYDLQLQLLNELSCLSPQPMNSNAINRSGRMKPLTPSNLDDLFSAENSSPRYADPTLTSTVFSPTHKSAVFNQFQQQQSLLSPVNTNFSSKNVEHPLMQASGRMSPRNVEPISPMSSRISMLAQREKQQQFRSLSSRELGSNSAAAAAASVNSWSKWGSPNGKLDWAVGTDDLGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEMKEKLATTVSSVAAAAAGSSSEVSNMSTQMESVDHAVLGAWLEQMQLDHLVAQQN 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3335g00031 724 SMART c3hfinal6 335 358 IPR000571 GO:0046872
Gabi3335g00031 724 SMART c3hfinal6 300 326 IPR000571 GO:0046872
Gabi3335g00031 724 Pfam CCCH-type zinc finger 305 325 IPR041367 -
Gabi3335g00031 724 SUPERFAMILY Ankyrin repeat 44 173 IPR036770 -
Gabi3335g00031 724 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Gabi3335g00031 724 SMART ANK_2a 122 154 IPR002110 GO:0005515
Gabi3335g00031 724 SMART ANK_2a 40 70 IPR002110 GO:0005515
Gabi3335g00031 724 SMART ANK_2a 87 117 IPR002110 GO:0005515
Gabi3335g00031 724 Gene3D - 302 363 - -
Gabi3335g00031 724 Gene3D - 38 176 IPR036770 -
Gabi3335g00031 724 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Gabi3335g00031 724 PANTHER UNKEMPT FAMILY MEMBER 47 666 IPR045234 -
Gabi3335g00031 724 ProSiteProfiles Zinc finger C3H1-type profile. 305 327 IPR000571 GO:0046872
Gabi3335g00031 724 FunFam Zinc finger CCCH domain-containing protein 66 258 326 - -
Gabi3335g00031 724 Pfam Ankyrin repeats (3 copies) 48 156 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3335g00031 Gabi-Chr3335 370913 374834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3335g00031 39 717 C2H2 Transcription Factor Family AT5G12850 53.448 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi3335g00031 Ank_2 5.7e-11 CL0465