Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3335g00023 ATGGATACTCGTAGAAAGTCTCCCTTGAAGCCATGGAAGAAAGGGCCAACCAGAGGGAAAGGTGGCCCCCAGAATGCTACGTGTGAGTATCGAGGCGTTCGGCAGAGAACATGGGGAAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGACTTTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCCCACCTCCAACCCAACACAAATTCACCTATCAAATCTGGAAAGTTCAAATGGTTGCCTTCAAAGAACTTCATTTCAATGTTTCCTTCTTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTACAAGAGCTTAAGCAGAACGCAGTAGCAAGTCAATCCCCTTCTAGTTCATACAGTAGTCCAAAGGCAGAAATTCAGAATGTGGATAGCAAAAATCATGCAAAAGATGCTCAAACATCACAGGAGATGCTTGGAGATCTTCAAGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGCTGGGAATTCTAAAAGAAGAAAGACAGACAGAAGGAACTGATAGTGCAGGAAGTTCGACAGCGCCTGAAGCTGTGTGGAGAGATAACAATGATCAACTGGGAGTGTTTTCTGACACGAGTGTTAACTGGGAGGCATTGATGGAGATGCATGGAATTGCAGGTATTCAAGAATCAGAAGCCACCCAACTTGAAGCATATGATCCAAATGATGAGCTTACTTTCTCAACCTCCATTTGGAACTTTCCAGATACATAG 837 0.4409 MDTRRKSPLKPWKKGPTRGKGGPQNATCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPNTNSPIKSGKFKWLPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQELKQNAVASQSPSSSYSSPKAEIQNVDSKNHAKDAQTSQEMLGDLQEKPQIDLHEFLQQLGILKEERQTEGTDSAGSSTAPEAVWRDNNDQLGVFSDTSVNWEALMEMHGIAGIQESEATQLEAYDPNDELTFSTSIWNFPDT 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3335g00023 278 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Gabi3335g00023 278 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Gabi3335g00023 278 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Gabi3335g00023 278 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Gabi3335g00023 278 MobiDBLite consensus disorder prediction 1 27 - -
Gabi3335g00023 278 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 241 - -
Gabi3335g00023 278 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Gabi3335g00023 278 MobiDBLite consensus disorder prediction 140 173 - -
Gabi3335g00023 278 MobiDBLite consensus disorder prediction 201 220 - -
Gabi3335g00023 278 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Gabi3335g00023 278 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Gabi3335g00023 278 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Gabi3335g00023 278 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3335g00023 Gabi-Chr3335 321697 322533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3335g00023 5 275 AP2-EREBP Transcription Factor Family AT3G57600 54.945 3.68e-94 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3335g00023 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3335g00023 - - gmx:100801311 459.144