Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3335g00022 ATGGAGGGAGGGGTCAGCAAGAAGAAAGCATCACCTCTCTCTTTGGAGCAATTCATCTCTATTACCACCCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATATCGAGCTCAATTGCCACAGGCGCGTCCAGGAATTTGGATACTGCTCAAAAGAGGGGTTCCACAATCCTTAACTTGAAATGTGTGGATGTCCAGACAGGGCTTATGGGAAAATCTTTGATCGAGTTCCAGTCTACAAAAGGAGATGTTCTTCCTGCACATAAGTTTAGTAGTCATGATGTTGTCGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGCGTAGTTTACAGGTTAAAGGACTCATCAATAACTGTTGCTTTCGATGATATACCAGAAGATGGTTTAAACAGTCCCCTTAGGCTGGAAAAAGTAGCAAATGAGGTGACATATCGTAGGATGAAAGATGCATTAATACAATTGAGTAAAGGAGTGCATAAGGGTCCTGCTGCTGATCTAATTCCTGTCTTGTTTGGGGAGAGACCACCAACAGTGTCCAAGAAGGATGTATCCTTCACTCTCTTCAATACCAATCTTGATCACTCTCAGAAAAATGCGATTTCAAAAGCCCTATCATCAAAGAATGTGTTCTTGCTACATGGACCTCCTGGAACGGGTAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTGAAACGTGGATCCAAGATTCTTGCTTGTGCTGCTTCAAATATTGCTGTTGACAACATCGTTGAGCGGCTAGTTCCACATAGAGTCAAGCTGGTGAGATTGGGTCATCCTGCACGGTTATTGCCTCAAGTACTGGACAGTGCACTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTGTTGAAAACCAAAGACAGAAATACAAGAAGGGACATACAGAAGGAACTTCGGACTCTATCCAAAGAGGAGCGTAAAAGGCAGCAGCTTGCTGTAACAGACGTAATTAAAAGTGCAGATGTAGTACTAACTACTTTGATTGGGTCTTTCTCTAAGAAACTAGAAAACACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCGAGATGTATACTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACCCTATTTGAACGACTTGCAGAAATGTATGGAGATGAAGTCACATGTATGCTTACTGTCCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAATAAGATCAAGGCTCATCCAAGTGTTGCTGGACACATGCTATATGATATTGAGGATGTGAAGAGGACGTCTTCAACTGAACCAACCCTTCTTCTTATAGACATAGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGAGAGCACTCTTAATGAAGGGGAAGCTGAGGTTGCTATGGCTCATGCAAAGAGACTAGTGCAAAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACCCCATATGCAGCCCAGGTTGTTTTACTCAAGATGTTGAAAAACAAGGATAACCGGATGAAGGATGTGGAAATCTCAACAGTTGATGGCTTTCAGGGAAGGGAGAAGGAGGCCATTATTATATCAATGGTTCGATCAAACTCAAAAAAAGAGGTGGGCTTTCTGAGTGATCGCCGGAGAATGAATGTGGCTGTGACAAGGGCAAGAAGGCAATGCTGTCTTGTCTGTGACACTGAGACAGTCAGTAGTGATGGGTTTCTAAAGCGATTGATTGAGTATTTTGAAGAGCATGCAGAGTATCTGAGTGCATCTGAGTACCAGAATGAGTAG 1944 0.4239 MEGGVSKKKASPLSLEQFISITTPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSSHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPAADLIPVLFGERPPTVSKKDVSFTLFNTNLDHSQKNAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRRDIQKELRTLSKEERKRQQLAVTDVIKSADVVLTTLIGSFSKKLENTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEVTCMLTVQYRMHELIMDWSSKELYNNKIKAHPSVAGHMLYDIEDVKRTSSTEPTLLLIDIAGCDMEEKKDEEESTLNEGEAEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKDNRMKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHAEYLSASEYQNE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3335g00022 647 FunFam DNA-binding protein SMUBP-2 41 143 - -
Gabi3335g00022 647 Coils Coil 298 318 - -
Gabi3335g00022 647 Pfam AAA domain 420 616 IPR041679 -
Gabi3335g00022 647 CDD SF1_C_Upf1 445 633 IPR047187 -
Gabi3335g00022 647 CDD DEXXQc_SMUBP2 196 444 - -
Gabi3335g00022 647 NCBIfam IGHMBP2 family helicase 345 640 IPR004483 GO:0003677|GO:0005524
Gabi3335g00022 647 SMART ultradead3 193 452 IPR014001 -
Gabi3335g00022 647 FunFam P-loop containing nucleoside triphosphate hydrolase 443 647 - -
Gabi3335g00022 647 SMART AAA_5 211 463 IPR003593 GO:0016887
Gabi3335g00022 647 Pfam AAA domain 197 411 IPR041677 GO:0004386
Gabi3335g00022 647 Gene3D - 41 143 - -
Gabi3335g00022 647 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 11 646 - -
Gabi3335g00022 647 Gene3D - 23 427 IPR027417 -
Gabi3335g00022 647 Gene3D - 443 647 IPR027417 -
Gabi3335g00022 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 636 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3335g00022 Gabi-Chr3335 312542 320972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3335g00022 170 380 Core DNA Replication Machinery Family AT1G08840 27.962 6.90e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3335g00022 - K19036 gmx:100810545 1167.53