Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3335g00017 ATGGCTGACCCTTACTACTCTAATTTCTTCTACTCATCATCATCATCATCATCATCATCATCATCAACAACATCATCAAGTTTCTTCCATTTCAATCCCATCATCCATCACCATTTTCCATCATCAAACCCTTCTCCACAACACCAACACCACCACCATCCCTATCTCCATAACTACATCAACCACACCACCAAAAACAACAACACCAGCTTTTTCCACTACCATCACAATACTACTACTACTACTACTACTTGTTCTTCTTCTTCACCACCTTCACCTCCTCTCAGAGAAGAACTCCCCCTCTTGAGTCTCATCCCTGCAAAGCAACAACAACAAGAAGATGAAGAGCAAGAACAAGAGGACCTTTCTTGCACTGCCATGGATGTTCAAGATGACAGCAGGATTAACAACATCTTAAAAGAGGAAGATAATTACGATTATGGCAATGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATTGCATCAGTGTTGTCATCTTCATCAGAGAATATAACTGATAAAGAACATGGTGGTGGTGGTGGTGGTGGTGGTGATGATGATTCTGGGTTCATGCTCAACAACAGACTCAACAAGGGACAGTATTGGATCCCTACACCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCTTGCCCTGTTTGTTGCAAAACATTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAGTCTCTTAGGGGTACCCAACCAACAGGCATGTTGAGGCTTCCTTGCTATTGCTGTGCCCCAGGGTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCTCTCAAAGATTTTAGAACACTTCAAACACATTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTAGCAAGGCTTTTGCTGTGAGGGGAGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTTTGGTATTGTATCTGTGGATCTGATTTCAAGCACAAGAGGTCTCTTAAAGATCATATCAAAGCTTTTGGGAGTGGCCATGCAGCTTATGGGATTGATGGCTTTGAAGAAGAAGATGAGCCAGCTTCTGAAGTTGAGCAAGATAATGATTCCACCCAGTAA 1152 0.434 MADPYYSNFFYSSSSSSSSSSSTTSSSFFHFNPIIHHHFPSSNPSPQHQHHHHPYLHNYINHTTKNNNTSFFHYHHNTTTTTTTCSSSSPPSPPLREELPLLSLIPAKQQQQEDEEQEQEDLSCTAMDVQDDSRINNILKEEDNYDYGNVTVALHIGLPSPSAAEIASVLSSSSENITDKEHGGGGGGGGDDDSGFMLNNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDSTQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3335g00017 383 PANTHER ZINC FINGER PROTEIN WIP2 60 379 IPR043584 GO:0003700|GO:0010468
Gabi3335g00017 383 FunFam Zinc finger protein WIP2 275 357 - -
Gabi3335g00017 383 ProSitePatterns Zinc finger C2H2 type domain signature. 224 244 IPR013087 -
Gabi3335g00017 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 249 IPR013087 -
Gabi3335g00017 383 MobiDBLite consensus disorder prediction 171 193 - -
Gabi3335g00017 383 SUPERFAMILY beta-beta-alpha zinc fingers 288 326 IPR036236 -
Gabi3335g00017 383 Gene3D Classic Zinc Finger 284 360 - -
Gabi3335g00017 383 Gene3D Classic Zinc Finger 221 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3335g00017 Gabi-Chr3335 261042 263507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3335g00017 1 380 C2H2 Transcription Factor Family AT3G57670 61.084 1.34e-146 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3335g00017 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3335g00017 - - qsa:O6P43_010164 520.776