Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3335g00016 ATGGAGACAGATAACGGTGACACGAGGTCTAGGAAAATGGAAGATTATGAAGTGATTGAGCAAATTGGCAGGGGAGCATTTGGTTCCGCTTTTCTCGTTCTTCACAAGTCTGAGAAAAAGAGGTATGTGTTGAAAAAGATTCGCTTGGCCAAGCAGACAGAGAAGTTCAAACGTACAGCACACCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACCATATATGTATTATAACTGGCTATTGTGAAGGAGGTGACGTGGCTGAGAACATAAAGAAAGCTCGAGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGTTGACTCAGTTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATACGGAAGACCTTGCTTCCTCGGTTGTAGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCCTATGGTTATAAATCTGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTACTGCACATCAGCCAGCATTTCGTGCTCCGGACATGACTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGGCCAACAGCAGCCGAATTGTTAAGGCATCCGCATTTACAACCTTATGTTCTTCGCTGTCATAATGCATCATCTAATGTTCTTCCAATATATCCTATAGTTAATTTAAAGGATAAAACAAGAAAATCTTATAAATCTAGTGGTGGTAAGGACCATAGGGACAAAAAAGCAGGATTAGTAAATCATTTGGAACGGGTTCATCCAATTGAGGGAAATGGAGATGTACAGCCGAGCAATCTTCCTAAGGATGGCAAGGTTACAGTCTCAGCCTGTGCAGAAGATCACCTTGAGACAAAGATGGTTGATCTTACCAGCTACATAGTGGAATCTTCTACTAGTATTAGTGGCTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGCGTGCAAGGAGGACTTTAAAAGTAGACATGCAAGGGAAACAGCTGACAGTGAGATCACTTCGAAGAGTACGCAAGATTCTGTGCATGAAGAACAAGGATTTTCTGCTGAACATTTTAAGAAATTAGAAGGGGTTGACATAAATGCAGTGACCACAGAAGTTGAAGATGCTTTTTCCAATGAAGGTTTTGATAATGCTGAAGCTCAGAGGGAAGATGGCAAAATTGAGGACTCAAGTAAATCAACAACGACCAGTGCAGACAGTAGTAGCACTGATAAAGATAAGTCCATTAATGAGGAAAGGCCATCACTAATTGTGCATCCTATATTGGTTGAACATGAAACTGAATCTGGAAACTGCTCAAAGAAAATTGAAAACCCTGATGCATTTAAAGAAGGCTCACATATGAACTGCTTGTCATCTGAAAGTAATAATACACTTCCAGTTAAGGATGATGATAGAGCAAAATCACACAGTATTTGTTCAACGCATAAAGAAGATGATAATGCAGTTGAGGATGATAAGACACCGACTGACATTTCATTCAGTGCACCTACTGAAAAAGGTGGTGATGAAACAATCAAGACGGTGTTGAATAGTCCTTGCCAGCAAAGAGCTGATGCTCTTGAATCTCTACTTGAGTTATGTGCTCAGCTACTTAAGCAAGATAAACTTGAAGAGCTTGCAGGGGTGCTAAGACCTTTTGGAAAAGAAGCTGTCTCATCCAGGGAAACAGCAATATGGCTCACAAAGAGCCTCTTATCCGCCCAAAAATTTAATCCTGAAACCTAG 1953 0.4071 METDNGDTRSRKMEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDVAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNTEDLASSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEITAHQPAFRAPDMTGLINKINRSCISPLPIVYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVLRCHNASSNVLPIYPIVNLKDKTRKSYKSSGGKDHRDKKAGLVNHLERVHPIEGNGDVQPSNLPKDGKVTVSACAEDHLETKMVDLTSYIVESSTSISGSKDGSTTSESTICSACKEDFKSRHARETADSEITSKSTQDSVHEEQGFSAEHFKKLEGVDINAVTTEVEDAFSNEGFDNAEAQREDGKIEDSSKSTTTSADSSSTDKDKSINEERPSLIVHPILVEHETESGNCSKKIENPDAFKEGSHMNCLSSESNNTLPVKDDDRAKSHSICSTHKEDDNAVEDDKTPTDISFSAPTEKGGDETIKTVLNSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLTKSLLSAQKFNPET 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3335g00016 650 CDD STKc_Nek 15 270 - -
Gabi3335g00016 650 MobiDBLite consensus disorder prediction 534 562 - -
Gabi3335g00016 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Gabi3335g00016 650 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3335g00016 650 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3335g00016 650 Gene3D Transferase(Phosphotransferase) domain 1 98 323 - -
Gabi3335g00016 650 MobiDBLite consensus disorder prediction 394 422 - -
Gabi3335g00016 650 MobiDBLite consensus disorder prediction 443 490 - -
Gabi3335g00016 650 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Gabi3335g00016 650 MobiDBLite consensus disorder prediction 522 575 - -
Gabi3335g00016 650 SUPERFAMILY Protein kinase-like (PK-like) 13 300 IPR011009 -
Gabi3335g00016 650 FunFam serine/threonine-protein kinase Nek6 isoform X2 96 284 - -
Gabi3335g00016 650 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3335g00016 650 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 13 601 - -
Gabi3335g00016 650 FunFam Serine/threonine-protein kinase Nek6 1 95 - -
Gabi3335g00016 650 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3335g00016 Gabi-Chr3335 220187 225369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3335g00016 16 271 MAP Kinase Kinase Kinase AT3G13530 32.685 6.36e-37 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gabi3335g00016 Pkinase 9.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3335g00016 K08857 - gmx:100793379 1070.84