Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3335g00014 ATGGCTAATTTCTGTATATACCTATTCCTACTCTCTGTGACCTTTGCAATCTTCAACCTTAGTTCTTGTTCATCAGAGAGGGATATCCTTCTCTCCTTCAAGGCCTCCATTGAAGACTCTAAGAAGGCCTTATCTAGCTGGTCAAATACTTCAGCAATCCACTACTGTAACTGGACTGGAATCACTTGCTCCACCACTCCTTCACTCTCAGTAACTTCTATTAATCTCCAGAGCTTAAACCTTTCTGGGGATATCTCATCTTCTATATGTGACCTTCCTAATCTGTTTTATCTCAACCTTGCTGATAATATCTTCAACCAGCCCATCCCTCTTCATCTTTCTCAGTGTAGTTCTTTGGAAACTTTGAATCTCAGTACCAATCTTATATGGGGCACTATCCCATCTCAGATTTCTAAGTTTGCTTCCTTGAAAGTGCTTGATTTCAGCCGAAACCATGTAGAAGGAAACATCCCAGAAAGCTTAGGCTCCTTGAAGAACCTCCAAGTTCTTAACATGGGAAACAACTTGCTTTCAGGTAGTGTACCTGCTGTCTTTGGCAATTTCACTAAGCTTGAAGTCCTTGATTTGTCTCAGAATCCTTACTTGGTGAGTGAGATTCCAGGGGATATTGGTGAACTTGGAAATCTTAAGCAACTTTTGTTGCATAGTTCTTCTTTTCAAGGTGAAATTCCAGCTTCTTTGGTAGGCCTGCATAGTTTGACTCATTTAGATCTCTCAGAGAACAATCTAACAGGTGGGATTTCTATGGCTCTGGTATCTTCTCTCAGGAACCTGGTTTCTTTTGATGTTTCCCAAAACAAGCTTTTGGGGCCATTTCCAACTGACATATGTAAAGGACAAGGCCTTATAATTCTCAGCCTTCATACAAATGCCTTCACTGGTTCAATACCCAACTCCATTGGTGATTGTAAGAGTCTTGAGAGATTCCAAGTTCAGGACAATGGTTTCTCTGGAGATTTCCCCATTGCATTATGGTCATTACCCAAAATTCAGCTCATTAGAGCTGAAAACAACAGATTCTCAGGAAAAATACCTGAGTCAATATCAAAAGCTGTGCAGTTGGAGCAAGTTCAGCTTGACAATAACAGCTTTGGTGGTAAAATTCCTCAAGGTCTTGGCCTTATCAAGAGCTTGTACAGATTTTCTGCTTCTCTCAATCGTTTCTATGGTGAACTTGCTCCAAATTTTTGTGACTCCCCAGTTATGAGCATAGTAAACCTCTCTCACAATTCCCTTTCTGGTCCAATCCCAGAGCTGAAAAAATGCCGGAAACTAGTTTCTTTGTCTCTGGCTGACAACAGTCTAACAGGTGAAATACCCTCTTCTCTTGCTCAGCTACCAGTGCTTACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAAAACTTGAAGCTTGCTCTTTTAAATGTGTCCTTCAATAAGCTATCAGGTAAAGTACCATACTCCTTGATTTCTGGTTTACCTGCCTCATTTTTGGAAGGTAACCCTGATCTTTGTGGCCCTGGATTGCCCAACTCCTGTTCTGATGACATGCCAAGACACTACACTGGTGGTCTTACAACCTTAACATGTGTCCTAATCTCTTTAGCCTTTCTTGCTGGAACTGTCATTGTTGCTGGTGGGTTTATATTGTATAGGAGATCTTGCAAGGGGAGTCAAGTAGGGGTCTGGCGTTCAGTGTTCTTCTATCCTCTCAGAATTACTGAGCATGATCTGCTTATGGGGATGAATGAGAAAAGCTCAATGGGAAATGGTGGAGTTTTTGGTAAAGTTTATGTTGTGAGTTTACCTAGTGGTGAACTGGTAGCTGTGAAGAAGCTGGTTAATTTTGGAAACCAGTCCTCAAAAACTCTGAAAGCTGAGGTCAAGACTTTGGCAAAAATTAGGCATAAGAATGTTGTTAAAATTCTGGGGTTCTGCCATTCTGATGAGTCAATTTTTCTCATTTATGAATACTTGCATGAAGGAAGCCTAGGGGATTTGATTTCCCGTCAGAATTTTCAGTTGCAGTGGGGAGTTAGATTAAGGATTGCCATTGGAGTTGCTCAAGGATTGGCATATCTTCACAAGGATTATGTCCCACACTTGCTTCACAGAAATGTCAAGTCAAAGAACATTCTTTTGGATGCAAACTTTGTTCCAAAACTAACAGATTTTGCTCTTGATCGAGTTGTTGGAGAAGCTGCATTTCAATCAACTTTGGATTCTGAAGCAGCTTCTTCCTGTTACATTGCACCAGAATATGGTTACAGTAAGAAAGCAAGTGAACAATTGGACGTGTATAGCTTTGGTGTTGTATTGCTAGAGCTAGTGTGTGGCAGGCAAGCAGAGCAAGCAGAATCAAGTGACTCCATTGACATTGTGAAATGGGTTAGAAGGAAAGTGAACATCACTAATGGGGTACATCAAGTTCTTGACCCAAGAATATCACATACTTGCCATCAAGAAATGATTGGAGCTTTAGATATTGCCCTTAGTTGCACTTCTGTGGTGCCTGAGAAAAGGCCATCAATGGTAGAAGTTGTTAGAGTTCTTCAGTCCCTTGAGTCAAGGACTTGTATTGCAAATTTGCAGGGTCCAATTGAGGAACCCTCCCTTCCAGTCTGA 2649 0.4119 MANFCIYLFLLSVTFAIFNLSSCSSERDILLSFKASIEDSKKALSSWSNTSAIHYCNWTGITCSTTPSLSVTSINLQSLNLSGDISSSICDLPNLFYLNLADNIFNQPIPLHLSQCSSLETLNLSTNLIWGTIPSQISKFASLKVLDFSRNHVEGNIPESLGSLKNLQVLNMGNNLLSGSVPAVFGNFTKLEVLDLSQNPYLVSEIPGDIGELGNLKQLLLHSSSFQGEIPASLVGLHSLTHLDLSENNLTGGISMALVSSLRNLVSFDVSQNKLLGPFPTDICKGQGLIILSLHTNAFTGSIPNSIGDCKSLERFQVQDNGFSGDFPIALWSLPKIQLIRAENNRFSGKIPESISKAVQLEQVQLDNNSFGGKIPQGLGLIKSLYRFSASLNRFYGELAPNFCDSPVMSIVNLSHNSLSGPIPELKKCRKLVSLSLADNSLTGEIPSSLAQLPVLTYLDLSDNNLTGSIPQGLQNLKLALLNVSFNKLSGKVPYSLISGLPASFLEGNPDLCGPGLPNSCSDDMPRHYTGGLTTLTCVLISLAFLAGTVIVAGGFILYRRSCKGSQVGVWRSVFFYPLRITEHDLLMGMNEKSSMGNGGVFGKVYVVSLPSGELVAVKKLVNFGNQSSKTLKAEVKTLAKIRHKNVVKILGFCHSDESIFLIYEYLHEGSLGDLISRQNFQLQWGVRLRIAIGVAQGLAYLHKDYVPHLLHRNVKSKNILLDANFVPKLTDFALDRVVGEAAFQSTLDSEAASSCYIAPEYGYSKKASEQLDVYSFGVVLLELVCGRQAEQAESSDSIDIVKWVRRKVNITNGVHQVLDPRISHTCHQEMIGALDIALSCTSVVPEKRPSMVEVVRVLQSLESRTCIANLQGPIEEPSLPV 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3335g00014 882 Pfam Protein kinase domain 592 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3335g00014 882 ProSiteProfiles Protein kinase domain profile. 591 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3335g00014 882 FunFam - 585 666 - -
Gabi3335g00014 882 Pfam Leucine rich repeat 142 200 IPR001611 GO:0005515
Gabi3335g00014 882 Pfam Leucine rich repeat 215 275 IPR001611 GO:0005515
Gabi3335g00014 882 Pfam Leucine rich repeat 430 489 IPR001611 GO:0005515
Gabi3335g00014 882 SUPERFAMILY L domain-like 24 301 - -
Gabi3335g00014 882 SUPERFAMILY Protein kinase-like (PK-like) 599 859 IPR011009 -
Gabi3335g00014 882 PRINTS Leucine-rich repeat signature 240 253 - -
Gabi3335g00014 882 PRINTS Leucine-rich repeat signature 453 466 - -
Gabi3335g00014 882 SMART LRR_typ_2 164 187 IPR003591 -
Gabi3335g00014 882 SMART LRR_typ_2 262 286 IPR003591 -
Gabi3335g00014 882 SMART LRR_typ_2 188 213 IPR003591 -
Gabi3335g00014 882 SMART LRR_typ_2 237 260 IPR003591 -
Gabi3335g00014 882 SMART LRR_typ_2 453 476 IPR003591 -
Gabi3335g00014 882 Gene3D Transferase(Phosphotransferase) domain 1 667 872 - -
Gabi3335g00014 882 Gene3D Phosphorylase Kinase; domain 1 584 666 - -
Gabi3335g00014 882 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 260 524 - -
Gabi3335g00014 882 SUPERFAMILY L domain-like 204 518 - -
Gabi3335g00014 882 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 861 - -
Gabi3335g00014 882 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Gabi3335g00014 882 ProSiteProfiles Leucine-rich repeat profile. 455 478 IPR001611 GO:0005515
Gabi3335g00014 882 Gene3D Ribonuclease Inhibitor 287 521 IPR032675 -
Gabi3335g00014 882 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 667 867 - -
Gabi3335g00014 882 FunFam Leucine-rich repeat family protein 25 182 - -
Gabi3335g00014 882 Gene3D Ribonuclease Inhibitor 23 180 IPR032675 -
Gabi3335g00014 882 Gene3D Ribonuclease Inhibitor 181 286 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3335g00014 Gabi-Chr3335 195321 198239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3335g00014 30 862 Receptor kinase-like Gene Family AT5G06940 64.678 0.0 1068
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3335g00014 Pkinase 6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3335g00014 - - gmx:100794428 1533.47