Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3335g00007 ATGCTTCTTAATCTTCTTCCTCTTCACATTGTCTTGCTAGTAGTACTCTCTTTCTTTGCTCCTTCCATCACCACCACCACTCTCAACTCCGACGGACTCTCCTTGCTAGCCCTCAAAGCCGCCGTGGAAGACGACCCAAGCGGCGTCTTCACCTCATGGTCCGACGCCGACTCCACCCCATGCCGGTGGTCCGGCGTGGCCTGCACCGGCGACAGAGTCACCCAATTAACACTCCGAAACAAAGGCCTCACCGGTTATATCCCATCCGAACTGGGTTTTCTTACATCACTGAAAAGACTAAGCCTTTCATACAACAACTTCACCAACGTCATTCCTTCACGTCTCTTCAACGCTACCACACTCATTGTCCTCGACCTCTCACACAACTCACTCTCCGGCCCCATCCCAACGGAACTTCGCTCCCTCAAATCGCTCCGCCACTTGGATTTGTCCTCAAATTTCCTTGACGGCACGCTCCCCGAAGCGCTTTCCGATCTCGCCGGCCTCGTCGGAACACTCAACCTCTCTTACAACCGCTTCTCCGGCGGGATTCCGGCGTCTCTCGGGAACCTCCCAGTGATCGTGAGTCTTGACCTACGTAACAACAACCTCACCGGAAAAATCCCTCAGGTGGGGTCCATTCTGAACCAGGGTCCCACCGCGTTCTCTGGAAACCCTGGCCTCTGTGGGTTTCCATTGCAGAACGCGTGCCCTGAAGCTCAAAAGCCTGGTGTTTTCACAAGCACAGAAGAAGAGCCTCAGAACCCCAAAGCCCTTCACCTCGGTGGTGGTGGTGGTAACCAAGAGAAGGAAAAACAGCGCGGTGGCGGCTCCGTCGCGGTTCTCGTTATCTCCGGGCTCTCCCTGGTGGTTGCGGCCGTTTCGCTTACCCTTTGGTTTTTCCGGCGAAGGTGGAACGGCGAGGAGGGCAAATTGGGGAATCGGAAATTTGAGAACGAGGTTGATGGAGTTGGAGGAGAAGGGGAAGGGCAACAGGGTAAATTCGTTGTGTTTGATGAAGGGTTTAGCTTGGAGTTGGAGGATTTGCTGAGAGCATCTGCGTATGTTGTTGGGAAGAGCAGGAGTGGGATCGTGTACAAGGTGGTCGGTGTTGGGAAAGGGTCGTCCGCGGCGGCGACGGTGGTGGCCGTTCGCCGGCTCAGCGAGGGTGATGCCACGTGGCGGTTCAAGGAGTTCGAATCTGAGGTGGAAGCCATTGCGAGGGTTCGTCACCCCAATGTTGTCCCCTTGAGAGCTTACTACTATGCACATGATGAGAAACTGCTTATCACTGATTTCATCCGCAATGGAAGCTTGCACACTGCGTTACATGGTGGGTCTTCCAATTCATTGCCACAATTGTCTTGGGCAACGAGGTTAAAAATTGCTCAAGAAACAGCCAGGGGCTTGATGTACATACACGAGTTCAGTGGACGCAAATATATCCATGGCAACCTAAAATCAACAAAGATCTTACTTGATGATGATTTCAGTCCTTATGTGTCAGGTTTTGGAATAACTCGTCTTTGTTTGGGTACCTCAAGGTCTACCACATTGGCACCAAAACGGCACAGTTCAAACCAATCTAATGTAACCTCTGCAAAGGGTTTAAAGGTTGAAGCTTTCTCTAACTGCTACTTGGCACCTGAGGTGCGCATGGGTGGTGGCAAGTTAACTCAGAAATGTGATGTGTATTCTTTTGGTGTTGTGCTTTTAGAACTTTTGACGGGTAGGGTACCTGATTTTGGAACAGAAAATGATGATAAGGTGTTAGAGAGTTTTGTGAGGAAAGCATTCAAGGAGGAACAGCCCTTGTCTGATATTATAGACCCTGCACTTCTGCCTGAGGTTTATGCTAAAAAACAAGTTATTGCTGCTTTTCATGTTGCTCTTAACTGCACTGAACTTGATCCGGAATTGCGACCTAGAATGAAAACCGTGTCCGAGAGCCTCGATCACATCAAAACACAGTGA 1974 0.5076 MLLNLLPLHIVLLVVLSFFAPSITTTTLNSDGLSLLALKAAVEDDPSGVFTSWSDADSTPCRWSGVACTGDRVTQLTLRNKGLTGYIPSELGFLTSLKRLSLSYNNFTNVIPSRLFNATTLIVLDLSHNSLSGPIPTELRSLKSLRHLDLSSNFLDGTLPEALSDLAGLVGTLNLSYNRFSGGIPASLGNLPVIVSLDLRNNNLTGKIPQVGSILNQGPTAFSGNPGLCGFPLQNACPEAQKPGVFTSTEEEPQNPKALHLGGGGGNQEKEKQRGGGSVAVLVISGLSLVVAAVSLTLWFFRRRWNGEEGKLGNRKFENEVDGVGGEGEGQQGKFVVFDEGFSLELEDLLRASAYVVGKSRSGIVYKVVGVGKGSSAAATVVAVRRLSEGDATWRFKEFESEVEAIARVRHPNVVPLRAYYYAHDEKLLITDFIRNGSLHTALHGGSSNSLPQLSWATRLKIAQETARGLMYIHEFSGRKYIHGNLKSTKILLDDDFSPYVSGFGITRLCLGTSRSTTLAPKRHSSNQSNVTSAKGLKVEAFSNCYLAPEVRMGGGKLTQKCDVYSFGVVLLELLTGRVPDFGTENDDKVLESFVRKAFKEEQPLSDIIDPALLPEVYAKKQVIAAFHVALNCTELDPELRPRMKTVSESLDHIKTQ 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3335g00007 657 FunFam Leucine-rich repeat receptor-like protein kinase 144 239 - -
Gabi3335g00007 657 Gene3D Ribonuclease Inhibitor 27 170 IPR032675 -
Gabi3335g00007 657 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 655 IPR046959 -
Gabi3335g00007 657 SMART LRR_typ_2 142 166 IPR003591 -
Gabi3335g00007 657 SMART LRR_typ_2 94 118 IPR003591 -
Gabi3335g00007 657 FunFam Leucine-rich repeat receptor-like kinase 33 143 - -
Gabi3335g00007 657 MobiDBLite consensus disorder prediction 245 273 - -
Gabi3335g00007 657 SUPERFAMILY L domain-like 30 234 - -
Gabi3335g00007 657 SUPERFAMILY Protein kinase-like (PK-like) 356 651 IPR011009 -
Gabi3335g00007 657 Gene3D Phosphorylase Kinase; domain 1 339 433 - -
Gabi3335g00007 657 Gene3D Transferase(Phosphotransferase) domain 1 434 657 - -
Gabi3335g00007 657 Pfam Protein tyrosine and serine/threonine kinase 357 650 IPR001245 GO:0004672|GO:0006468
Gabi3335g00007 657 ProSiteProfiles Protein kinase domain profile. 351 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3335g00007 657 Gene3D Ribonuclease Inhibitor 171 239 IPR032675 -
Gabi3335g00007 657 PRINTS Leucine-rich repeat signature 142 155 - -
Gabi3335g00007 657 PRINTS Leucine-rich repeat signature 121 134 - -
Gabi3335g00007 657 Pfam Leucine rich repeat 96 153 IPR001611 GO:0005515
Gabi3335g00007 657 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3335g00007 Gabi-Chr3335 68052 70790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3335g00007 10 656 Receptor kinase-like Gene Family AT3G57830 58.182 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi3335g00007 PK_Tyr_Ser-Thr 4.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3335g00007 - - gmx:100796011 954.125