Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3335g00005 ATGGATTCGAATTCCCGTTATCATGTCCAACAGCACCAACCAAATTCTGGGTTACTTCGCTTTCGGTCAGCACCTAGTCCAGTTCTTGCAAATTTCAAACAAGGCGAAGGTGTTTCTAATAAGGTTAACCCCTGGGAGGATTCTGAACCAGAGAGGTTAGTTTTGAGGTTCTTGAATTCCGGTGACAGCAGCAACGATACAGATACAGCTTCAGCTTCGGCTAGCTTACGAGAATTCGTGCCTTGTAATAATAAATCACCCAACGAATCATCATCGTCACCACCTCTGAGTCGAATGAATTCCCAACAAGGGTATAGTTCTTCTGGCAAACCCTCTCGCTATCCGAGGCATAACTCTATTTCAACGGATCCTCGTGGAAGCTTTAATTCCCATCTTCTTAGGCAGAGTAGCTTCCCTTCTGGCCATTTCTCCAACAATATCTCCTTTCAGAATGGGTATGATACTATGAAAGGTGTTGGAAACTATGGTGGGGTGAATGGCAGTGATGGTGAACTCAGTCTATCTATGAATAGATTGAAGAACCAAATTAGCTTCTCGTCAAGAAGTCCTTCTTCCTTGGGAATGTTATCACAATCACAAGACTCCAAAATGGGGAGCGAGAGCATAGGGGCAACTAGCCCTGATGACCGGAGACAGGGAGGTAGCAATGGTGATTCTCAATATTATAGTCCTGGATTCCCTTATGGTTCTTGGAATGAGACATCACACCTCTCAGATAAACTCATTGGCTCAAAAAGAGAGCGAAATATTAATGATAAGTTGCTTTCTGATGCTCAGAATGAAGAGCTAGGAAATCAAGTTCATACACTATCACATCACTTGAGTTTGCCAAGAGCATCATCGGAGATGTTTGCTATGGAGAATTTTCTTCAGTTCCCAGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTCGGATCAGTGAACGAATGAGAAAATTGCAAGAGCTTGTTCCAAACATGGACAAGCAAACCAGCACAGCAGAAATGTTGGACTTGGCTGTAGAGTATATTAAAGATCTTCAGAAACAATTCAAGACTCTGGGTGAAAAACGAGCTAAATGCAAGTGTATAAGCATGCCAAAGTCAGACGAAACAGATCAAATTGCTTGA 1179 0.4275 MDSNSRYHVQQHQPNSGLLRFRSAPSPVLANFKQGEGVSNKVNPWEDSEPERLVLRFLNSGDSSNDTDTASASASLREFVPCNNKSPNESSSSPPLSRMNSQQGYSSSGKPSRYPRHNSISTDPRGSFNSHLLRQSSFPSGHFSNNISFQNGYDTMKGVGNYGGVNGSDGELSLSMNRLKNQISFSSRSPSSLGMLSQSQDSKMGSESIGATSPDDRRQGGSNGDSQYYSPGFPYGSWNETSHLSDKLIGSKRERNINDKLLSDAQNEELGNQVHTLSHHLSLPRASSEMFAMENFLQFPDSVPCKIRAKRGFATHPRSIAERVRRTRISERMRKLQELVPNMDKQTSTAEMLDLAVEYIKDLQKQFKTLGEKRAKCKCISMPKSDETDQIA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3335g00005 392 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 379 - -
Gabi3335g00005 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 363 IPR011598 GO:0046983
Gabi3335g00005 392 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3335g00005 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 378 IPR036638 GO:0046983
Gabi3335g00005 392 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3335g00005 392 MobiDBLite consensus disorder prediction 58 134 - -
Gabi3335g00005 392 FunFam Transcription factor bHLH130 family 314 383 - -
Gabi3335g00005 392 MobiDBLite consensus disorder prediction 185 231 - -
Gabi3335g00005 392 Pfam Helix-loop-helix DNA-binding domain 319 364 IPR011598 GO:0046983
Gabi3335g00005 392 Gene3D - 315 382 IPR036638 GO:0046983
Gabi3335g00005 392 SMART finulus 319 369 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3335g00005 Gabi-Chr3335 45070 48504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3335g00005 1 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.078 7.38e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3335g00005 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3335g00005 - - gmx:100796534 473.011