Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3334g00022 ATGACAATCTCAAGATATTTCAAATGCTTTAACCTGGTTTCAACTATAAAAGAGTTACTTCAGAAATTAAGAGAGACAAGTTGGGATGCTTTCTTGGTTCATGTTCGAGAATTTTACATAAAACATGACGTTGACATTCCAGATATAAGTGCAAAATATATTGGAATAAGAGGTCATGCTCGAAATGAACAAGAATTGTCTTGGGATTATGGTTCCAAACAACTCCTTTTGTTCGCTCGCAAGACCAAAGGTTTAGTAGTTGGCATGAAGGTTCAGTCCCTCATGTCCACACATCGCTTAGTGTGGAACTCTGTATCTGGTGACCTTGGAAGCATGGATGAAGATGTAATAAATTATGCAAACTTCAATGAGAATGAAGATGACATGCTTGATAAACTGGGAGATGACATATTGAATGAACCAATTAACAATATGTCAAATAGTATTGTGTTGACGCCGACAAAGAATATTGATTGTTTGATTGAGGTTGGAATGGAATTTTCTGAACGAAAGGATATATTAGACTTGTACACAACATTTGCTAGGACAACAGGTTTTGGAGTTCGGGTTAGAACAACTAAGAAGAACTACATCAAGGTAACATGTGCTAGAGAGGGTTTTGCAGAACAAAAAAAAAAGAGTGTTGATCAAGTTTCTCACGGAAATTTGATAAGGAGGACATCATCAGCACGCATAGGGTGTGAAGCTTGTATTAAGGCTTGTACAAATGAAAAAATAAAATTGTGGAGAATTACATATTTTTCTGATAACCATAATCATGGTTTGGTTTCTCCAATGAGTGTTTCATATCTGAGATCACACAAAAAAATGCCTGCTGCTGCAAAATCATTGATAGAAAAATTCAATGATTCGGGTTTGCCCATCGGAAAGGTTGCCACTATCCTTAGAGGCAATGATGTATTGTTTGATAGCCGAGATTGTTATAATCATATGAAAAATGTGAGAAAAAAAATATATGATGCAGGGGATGCACAAGCTGTGTTACATTATTGTGTTAAACAAAAGACAATGAATCCAAATTTTTTTTATTCCATCAAGTGTGATGAAGATGATCGCATGGAAAGCTTTTTTTGGATTGATGCAAGGTGTAGGCAGGCTTATGAGCTTTTTGGGGATGTCATCACCTTCGACACAACATATAGGACTAATAAGTATTCCATGCCATTTGGACCTTTTGTTGGGGACATGGCAATTACCAATGCGGTATCCAAAGTTTTTCCAAAAGCCAAACATCGATTTTGTTTGTGGCATATTATGAAAAAATTTCCAGAGAAGCTTTCTCGTGTTTATCATGAGCATGCATCTTTTGGTAATCAAATACATCAGAGTGTTTGGAACTCCAAAAGCACTGAAGACTTTGATGATAGATGGAATCATATTCTTGTTAAGTATGGTCTTGATGGAAATGAGTGGTTGCATACACTATATTCAATTAGATCCTCTTGGGTACCAATATTTAACAGGTCCACTTTCTTTGCTGGTATGAACACTACGCAGCGGAGTGAAAGTATAAATTCATTCTTTGATGGTTTTGTTACAGCTGGTACAACATTAAAAGAATTTGTGGAAAAATATAATCAAGCTGTAGATACTCGCTACGAGTCTTTTAGAATGGAAAACTTTGAATCTATGCACAAAGAAAGACGTTTGTTCAGCAAAGAGTTGTGTGATAGTTTACAATACTCTACGGAGAAACTTGGAAATGACGGAGAATGGGTTACCTATAGAGTTTTTAATATGGAAGATATAGAAAATTCTGCAACAGTGGAGATAAAGGTGGATGATAAAGAAGCTAGGTGTTCTTGTCAATATTTTGAATTCATGGGAATCCTACGTAAGCATATTCTTGCTATTTTGTTTGTTGAAGGTGTTTATCAAATTCCTGAGCATTTCATTTTGCGTCGTTGGAGCAAGGAAGGAAATTATATACTAAGTTCATACAACGACACATGTTTTTCTCCTGGAGATGGACTCCTTCAGAACCTTCAGCTAAGCTCTAAATTGTCTAGACTTGCTGAGCTTGCAAAAAGGTCACACAAGGCATTTAGAATCATTAATGATGGTGTTGACTCTCTTGCTGCGTTTGCAGAAAAGTGTTTAATATCTGAGGAGAGTGAGGGTCTAGAGGATTTCAACTTACATTCTTTGGATTCTCTACTCGAAGAGTCTTCCATTATGAACTTGAAGGATCCTAACATTTCACAAACTAAAGGCTGTAAAAGGATTCAAAGTGGGATTGAAGAAGCATCAAAGCATACTAATATACGTGGACATTGCAAGAAACGAGGACATAATAAGCGTACATGCAAAGAAAAAAATGGAACTGATGTTGAAGTTAATTTTGAGGCTAGCATTTGCTTGTCATTCCTTTCTTGGTGA 2400 0.3617 MTISRYFKCFNLVSTIKELLQKLRETSWDAFLVHVREFYIKHDVDIPDISAKYIGIRGHARNEQELSWDYGSKQLLLFARKTKGLVVGMKVQSLMSTHRLVWNSVSGDLGSMDEDVINYANFNENEDDMLDKLGDDILNEPINNMSNSIVLTPTKNIDCLIEVGMEFSERKDILDLYTTFARTTGFGVRVRTTKKNYIKVTCAREGFAEQKKKSVDQVSHGNLIRRTSSARIGCEACIKACTNEKIKLWRITYFSDNHNHGLVSPMSVSYLRSHKKMPAAAKSLIEKFNDSGLPIGKVATILRGNDVLFDSRDCYNHMKNVRKKIYDAGDAQAVLHYCVKQKTMNPNFFYSIKCDEDDRMESFFWIDARCRQAYELFGDVITFDTTYRTNKYSMPFGPFVGDMAITNAVSKVFPKAKHRFCLWHIMKKFPEKLSRVYHEHASFGNQIHQSVWNSKSTEDFDDRWNHILVKYGLDGNEWLHTLYSIRSSWVPIFNRSTFFAGMNTTQRSESINSFFDGFVTAGTTLKEFVEKYNQAVDTRYESFRMENFESMHKERRLFSKELCDSLQYSTEKLGNDGEWVTYRVFNMEDIENSATVEIKVDDKEARCSCQYFEFMGILRKHILAILFVEGVYQIPEHFILRRWSKEGNYILSSYNDTCFSPGDGLLQNLQLSSKLSRLAELAKRSHKAFRIINDGVDSLAAFAEKCLISEESEGLEDFNLHSLDSLLEESSIMNLKDPNISQTKGCKRIQSGIEEASKHTNIRGHCKKRGHNKRTCKEKNGTDVEVNFEASICLSFLSW 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3334g00022 799 Pfam SWIM zinc finger 598 626 IPR007527 GO:0008270
Gabi3334g00022 799 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 161 697 IPR031052 GO:0006355
Gabi3334g00022 799 ProSiteProfiles Zinc finger SWIM-type profile. 594 630 IPR007527 GO:0008270
Gabi3334g00022 799 Pfam FAR1 DNA-binding domain 176 263 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3334g00022 Gabi-Chr3334 295666 304498 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi3334g00022 FAR1 1.3e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3334g00022 - - qlo:115970754 521.546