Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3334g00021 ATGAAGGAAGGGGGTGGTAGGAAGCAGGGTGCAGCCTCACCCTGTGCTGCATGCAAGCTTCTGAGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCCTATTTTCCAGCTGATGAACCCCAAAAGTTTGCAAATGTGCACAAGGTGTTTGGTGCCAGCAATGTCAACAAGATGCTTCAGGACCTACCAATGCATCAACGAGGGGATGCTGTGAGTAGCATGGTTTATGAGGCCAATGCAAGGGTTCGAGACCCTGTGTATGGGTGTGTTGGGGCCATCTCTTCTCTTCAGCAACAGATTGATGTGCTGCAGACCCAATTAGCCCTGGCCCAAGCTGAAGTGGTACACCTTAGGGTGCGCCAAACTAGTTGCTTTTCCAATCCTGGTCTTGGGTCCACCAGCCCAACTAATAGTGGGTCCCCATCATCCAAGATTATGGACTTAAAAGCCAAGCCTATTTTTGACATGGACATGGTGGTTGACCAAGCCAGCTATGGTGGTTCCATGTGGTCATAA 516 0.5 MKEGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRVRQTSCFSNPGLGSTSPTNSGSPSSKIMDLKAKPIFDMDMVVDQASYGGSMWS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3334g00021 171 Coils Coil 93 113 - -
Gabi3334g00021 171 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Gabi3334g00021 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 123 - -
Gabi3334g00021 171 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3334g00021 Gabi-Chr3334 289405 291989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3334g00021 1 171 AS2 family AT1G31320 79.070 3.84e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi3334g00021 LOB 1.8e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3334g00021 - - gmx:100794219 304.293