Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3334g00016 ATGGGTGTACCCAGGTCTGGTAACTCTAGTTTGTATTGTTGGGACACTGTCTCTTCCTTCAAAAGGAAAAGACTTTACAACAATGGTTCTGTTCCTTTGGAGAATCTTGCTGTTGGGGATGCTCAAGTTTGCACGACGGTGGGGTGTTGGAGAACCAATGACACGTTTCAATTGCCATCTGGGTCTGATGAATTTGCTTCAATTTCATCTAGGTATGGCTTCTCTTGTGGAATTCTGAGGATTGGTTCTTTGGTTAAGTGTTGGGGAGATATGGATATTGCGAGTCAGATAGAGAATGAGTTTGGAAACATGTCCATGTTGAGTATTGTAGCGGGTGGTTCACATGTTTGTGGGTTGAATTCAACTGGGTTTTTGGTATGCAGAGGGAGTAACAGTTTTGGGCAAGTGAATGTTCCCCAAGGTGGGCTTTTGAGTTTGGTGGGTTGGCATTGGGAGCTGAGCATGGTTGTGCAGTTAGAAGATGAAGATGCAGAGATTTACCCGGTCATGGAGAAAACTTTCTTCCTTTTAACTTTTGTCTTGTCATTCCACCATTTCATGGCCTCCCCAGATATAAGCAACATCAATGTCACTATAGACCAATCTACACTAATGGCCTTTAAGTCTTATATCACATTGGATCCCCAAGACATGTTGGCCAAAAATTGGTCTACCTCTGACTCTGTGTGCAACTGGTTTGGTGTCACTTGTGATACAAAGTATGGAAGGGTCACGGGCTTAAATCTCACAAACATGAATTTAAATGGTACCCTTCCTCCTCATTTAGGAAACTTAACTTTTCTTGTTGAGCTTGATCTTCATAACAATAGCTTTCATGGAATTGTACCAAAAGAGTTGGCCTTAATACCTAGATTGAAGGTGTTCAACTTGTGCACTAACAATTTTGGTGGAGAATTTCCAACATGGATGTGGGAGTTATCTAAACTCCAACATTTAAGTCTCTGCAATAACAGTTTTTCAGGTTTGGTTCCTGCATCCCTATCCAACTTGTCAGAGCTTGAAACTTTGGATTTGAGCTTTAATTTCTTACATGGGAGCATTCCACCTGAGCTTGGAAGGCTTCATAACTTGACATTTTTAGAGTTGGCAAACAATCATCTCTCCAGCGACATCCCTTCTTCAATCTTCAATATCTCCACACTTCAAGTGATTGATTTCTCGTATAATTTTTTATCAGGAAGCATCCCTCAAAAAGTTGGTGATCTATCACAACTAAGAAGCATAAATTTGAGCAAAAACAACCTTTCAGGATCCATACCAATATACTTGTTCAACATATCTACACTTCAAGAGATTCAATTCACTTACAATAACCTATCTGGCTCTTTGCCATCTTATATGTGTCGTGGGCTTCCACTGCTTGAAAATCTTGACCTCTCTGGGAATTCATTTTCTGGTCAAATTCCACAAAGTTTGGATCAATGTAAAGAGCTCAAATATCTGAAGATGATCAACAATAGATTTTACGGACACCTGCCTAGTGATATCGGGAGATTATCTATGCTTGAGGAGTTAGATCTCAGTGACAACAATCTAACAGGTTCACTTCCACCATCTCTTTTCAACATATCCTCTTTGAGACTAATAAATCTTCGGAACAACATCTTCGGTGGTCAACTTCCAGAAGAAATATGTACCATACCTTACGAGATTGGTGACTTAAAAAACCTTCAGCAATTGCATTTGCAAAATAACAGACTTAGAGGATCTATTCCTCCAAACATCTTCAACCTCTCAGGGTTACAAAGTCTGTCACTATCATATAACCAACTCTCAGGAAATCTTCCAAATGTGTATCATAGCCTTTCCAATCTCCAATTCCTGTACCTTGCAAACAACAATCTTAGTGGAGAAATTCCAAGTGCCCTTTACAATGCTTCAATGCTTCATGAACTTGTACTTGCAAACAATTCATTCACTGGAGTTATACCTGACTCAATTGGGAATTTAAGGAACCTTCAACTCCTTTCTCTGGTAGGAAACAAGTTCACTAGTGATCCTTCTTCTCCAGAAATTAGTTTCCTCACTTCATTGACAAAGTGTAGACAATTGAAAAGGATTTGGTTATCATTGAATCCTCTTAATGGAACACTTCCAAATTCTATTGGAAACCTGTCAAGCTCTCTTCAAATTTTCAACGCCTGGAGTTGTAATATCAAGGGCGAAATTCCTTCAGAGATTGGTAATTTAAAGAACTTGTTTGATGTTGTTCTGAATGATAACCAACTTATTGGACAGGTTCCAAGTACAATTGGCACCTTGCCACTTCTCCAACGTTTGGATCTCTCAGACAACAATCTAAATGGCTCAATCCCAGGTCAGATTTGTCAGTTACTAAAGTTGAATGAGTTGAGTCTTAGCAAAAACAAATTTTCTGGGGCAGTGCCAGGATGCATGGGGAATCTTACTTCTCTAAGGAATCTTTACTTGGATTCCAATAACCTCAACTTTACAATACCTTCTTCCCTTTGGAGCCTCACTGATATCTTGGAGGTCAACTTTTCCTCTAATGGTTTCAGTGGCTCTTTGCCAACTGAGATAAATGGCATGAGTTCTGTGATAAAATTGGACATATCAAAGAATCATCTTTCTGGAAACATTCCCATTGAGATTGGTGGGTTGCAGAGGATATTGAACCTTTCATTAGCTAATAATATGTTACAAGGGCCTATTCCTGATTCAGTTGGCAATATGCTAAGCTTGGAATTTCTAGACTTTTCTCATAATCTTTTATCAGGAATCATCCCCAAGTCAATGGAGAACCTTCTTTATCTCAAATTTATCAACTTGTCTTATAATAAACTACAAGGGGAAATTCCTTCTGGTGGCCGTTTTGCAAATTTCACAGCTCAATCATTCATGATGAATGATGCACTTTGTGGAAGACCTGAGCTAGAAGTCCAACCATGTCCCAGAAGTAGTGGTGCTAAACATAGCAGGACAAGCAAAAAGATTATACTCAAAGTTATAGTACCCATAATTGTGTCTGGTGTCTTTGTTGGTTGTGCAATTTTTCTAATACACAGGAGAAAATCTAGTAAAGGTTTAACTGTTATAGACTTGCCAACATTCCAATTCCCAAGTCGAATTTCCTACTATGAACTTGTGGAAGCAACACAGCAATTTGATGAGAGCAATGTTCTTGGAAAAGGGGGTTTCAGTTCTGTGTACAGAGGTGAGCTTTCAAATGGGGTGGTGATTGCAGTCAAAGTATTCAATTTGGAAGTGCAACAAGCATCAAGGAGTTTTGATGTAGAATGTGAAGCAATGCGCAATCTTCGCCATCGTAATCTAGTTAAAGTCATTACCAGTTGTTCTAATGCCTTTGATTTCAAAGCTTTGGTTATGGAATTTGTGCCAAATGGGAGCCTAGAGAAGTGGTTGTATTCTCATAACTATTTCCTACCTTTCGTACAAAGGTTGGACATAGTAATAGATGTTGCATCTGCCTTGGAGTATCTCCATCATGGTAACTCAAAACCTGTGGTACACTGTGACCTGAAGCCAAGCAATGTTTTGTTGGATAAAAATATGGTTGCTCATGTTTGTGATTTTGGCATTGCTAAACTCTTGGAAGAAGGACAATCTCAAATTCACACCAACACCTTTGCAACTCCTGGTTACATTGCACCAGAATATGGAACCAAAGGTGTTGTGTCCATTAAAGGAGATGCATACAGCTATGGTGTTATGCTGATGGAAGTATTCACAAGAAAGAAGCCAACTGATGAAATGTTTGTAGAGGGACTAAGCTTAAGGTCATGGATCCATGAGTCAATGCCACGTGGGATCATTCAGGTTGTAGACCCTAATTTGCTGGAGGGAGAGGAACAACTTGTTTCTGCTAAGAAAGTAGCTTTATTAAATATCATGGAGTTGGCTTTGAATTGCTCTGTAGAGTCCCCTGATGAGAGAATGAGTATGGAGGAAGTCTTTAGTCGCATGAACAAAATCAAAACTATATTTTTGCAGATGGTAGAAGAAAATTTAAGTTAA 4017 0.3913 MGVPRSGNSSLYCWDTVSSFKRKRLYNNGSVPLENLAVGDAQVCTTVGCWRTNDTFQLPSGSDEFASISSRYGFSCGILRIGSLVKCWGDMDIASQIENEFGNMSMLSIVAGGSHVCGLNSTGFLVCRGSNSFGQVNVPQGGLLSLVGWHWELSMVVQLEDEDAEIYPVMEKTFFLLTFVLSFHHFMASPDISNINVTIDQSTLMAFKSYITLDPQDMLAKNWSTSDSVCNWFGVTCDTKYGRVTGLNLTNMNLNGTLPPHLGNLTFLVELDLHNNSFHGIVPKELALIPRLKVFNLCTNNFGGEFPTWMWELSKLQHLSLCNNSFSGLVPASLSNLSELETLDLSFNFLHGSIPPELGRLHNLTFLELANNHLSSDIPSSIFNISTLQVIDFSYNFLSGSIPQKVGDLSQLRSINLSKNNLSGSIPIYLFNISTLQEIQFTYNNLSGSLPSYMCRGLPLLENLDLSGNSFSGQIPQSLDQCKELKYLKMINNRFYGHLPSDIGRLSMLEELDLSDNNLTGSLPPSLFNISSLRLINLRNNIFGGQLPEEICTIPYEIGDLKNLQQLHLQNNRLRGSIPPNIFNLSGLQSLSLSYNQLSGNLPNVYHSLSNLQFLYLANNNLSGEIPSALYNASMLHELVLANNSFTGVIPDSIGNLRNLQLLSLVGNKFTSDPSSPEISFLTSLTKCRQLKRIWLSLNPLNGTLPNSIGNLSSSLQIFNAWSCNIKGEIPSEIGNLKNLFDVVLNDNQLIGQVPSTIGTLPLLQRLDLSDNNLNGSIPGQICQLLKLNELSLSKNKFSGAVPGCMGNLTSLRNLYLDSNNLNFTIPSSLWSLTDILEVNFSSNGFSGSLPTEINGMSSVIKLDISKNHLSGNIPIEIGGLQRILNLSLANNMLQGPIPDSVGNMLSLEFLDFSHNLLSGIIPKSMENLLYLKFINLSYNKLQGEIPSGGRFANFTAQSFMMNDALCGRPELEVQPCPRSSGAKHSRTSKKIILKVIVPIIVSGVFVGCAIFLIHRRKSSKGLTVIDLPTFQFPSRISYYELVEATQQFDESNVLGKGGFSSVYRGELSNGVVIAVKVFNLEVQQASRSFDVECEAMRNLRHRNLVKVITSCSNAFDFKALVMEFVPNGSLEKWLYSHNYFLPFVQRLDIVIDVASALEYLHHGNSKPVVHCDLKPSNVLLDKNMVAHVCDFGIAKLLEEGQSQIHTNTFATPGYIAPEYGTKGVVSIKGDAYSYGVMLMEVFTRKKPTDEMFVEGLSLRSWIHESMPRGIIQVVDPNLLEGEEQLVSAKKVALLNIMELALNCSVESPDERMSMEEVFSRMNKIKTIFLQMVEENLS 1338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3334g00016 1338 Gene3D Ribonuclease Inhibitor 198 352 IPR032675 -
Gabi3334g00016 1338 Gene3D Ribonuclease Inhibitor 353 454 IPR032675 -
Gabi3334g00016 1338 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 456 547 - -
Gabi3334g00016 1338 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1126 1335 - -
Gabi3334g00016 1338 SUPERFAMILY Protein kinase-like (PK-like) 1031 1326 IPR011009 -
Gabi3334g00016 1338 Pfam Leucine rich repeat 290 348 IPR001611 GO:0005515
Gabi3334g00016 1338 Pfam Leucine rich repeat 563 622 IPR001611 GO:0005515
Gabi3334g00016 1338 Pfam Leucine rich repeat 363 422 IPR001611 GO:0005515
Gabi3334g00016 1338 Pfam Leucine rich repeat 764 822 IPR001611 GO:0005515
Gabi3334g00016 1338 FunFam Leucine-rich repeat receptor-like kinase 200 312 - -
Gabi3334g00016 1338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1169 1181 IPR008271 GO:0004672|GO:0006468
Gabi3334g00016 1338 Gene3D Transferase(Phosphotransferase) domain 1 1126 1335 - -
Gabi3334g00016 1338 SUPERFAMILY L domain-like 477 706 - -
Gabi3334g00016 1338 SMART LRR_typ_2 265 288 IPR003591 -
Gabi3334g00016 1338 SMART LRR_typ_2 409 433 IPR003591 -
Gabi3334g00016 1338 SMART LRR_typ_2 458 482 IPR003591 -
Gabi3334g00016 1338 SMART LRR_typ_2 361 385 IPR003591 -
Gabi3334g00016 1338 SMART LRR_typ_2 506 530 IPR003591 -
Gabi3334g00016 1338 SMART LRR_typ_2 561 585 IPR003591 -
Gabi3334g00016 1338 SMART LRR_typ_2 313 336 IPR003591 -
Gabi3334g00016 1338 SMART LRR_typ_2 761 785 IPR003591 -
Gabi3334g00016 1338 SMART LRR_typ_2 337 360 IPR003591 -
Gabi3334g00016 1338 SMART LRR_typ_2 905 928 IPR003591 -
Gabi3334g00016 1338 SMART LRR_typ_2 657 682 IPR003591 -
Gabi3334g00016 1338 SMART LRR_typ_2 809 833 IPR003591 -
Gabi3334g00016 1338 SMART LRR_typ_2 609 633 IPR003591 -
Gabi3334g00016 1338 FunFam Leucine-rich repeat receptor protein kinase EMS1 380 455 - -
Gabi3334g00016 1338 SUPERFAMILY RCC1/BLIP-II 8 140 IPR009091 -
Gabi3334g00016 1338 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 313 379 - -
Gabi3334g00016 1338 FunFam Serine-threonine protein kinase plant-type 1030 1125 - -
Gabi3334g00016 1338 SUPERFAMILY L domain-like 715 971 - -
Gabi3334g00016 1338 Gene3D Ribonuclease Inhibitor 679 978 IPR032675 -
Gabi3334g00016 1338 FunFam Inactive leucine-rich repeat receptor-like protein kinase 683 979 - -
Gabi3334g00016 1338 ProSiteProfiles Protein kinase domain profile. 1049 1330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3334g00016 1338 PANTHER OS04G0122200 PROTEIN 553 1331 - -
Gabi3334g00016 1338 SMART LRR_sd22_2 361 387 - -
Gabi3334g00016 1338 SMART LRR_sd22_2 905 931 - -
Gabi3334g00016 1338 SMART LRR_sd22_2 585 614 - -
Gabi3334g00016 1338 SMART LRR_sd22_2 313 339 - -
Gabi3334g00016 1338 SMART LRR_sd22_2 506 532 - -
Gabi3334g00016 1338 Gene3D - 6 171 IPR009091 -
Gabi3334g00016 1338 Gene3D Ribonuclease Inhibitor 455 553 IPR032675 -
Gabi3334g00016 1338 Gene3D Ribonuclease Inhibitor 554 678 IPR032675 -
Gabi3334g00016 1338 ProSitePatterns Protein kinases ATP-binding region signature. 1055 1077 IPR017441 GO:0005524
Gabi3334g00016 1338 SMART serkin_6 1049 1329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3334g00016 1338 Pfam Protein kinase domain 1050 1319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3334g00016 1338 FunFam Leucine-rich repeat receptor protein kinase EMS1 554 646 - -
Gabi3334g00016 1338 Pfam Leucine rich repeat N-terminal domain 201 238 IPR013210 -
Gabi3334g00016 1338 Gene3D Phosphorylase Kinase; domain 1 1032 1125 - -
Gabi3334g00016 1338 Pfam Leucine Rich Repeat 509 527 IPR001611 GO:0005515
Gabi3334g00016 1338 SUPERFAMILY RNI-like 246 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3334g00016 Gabi-Chr3334 235246 247178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3334g00016 169 1326 Receptor kinase-like Gene Family AT5G46330 35.160 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi3334g00016 Pkinase 3.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3334g00016 - K13420 qsa:O6P43_031966 1173.69