Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3334g00010 ATGGAGGATTCCGAGGGAGTCCTCAACTTCGATTTTGAGGGCGGCCTCGACGCCGTACCCTCCGCCGCCGCCACCGCCGTACCCTCCTCCGCCGCTGCTGCAACCGCTTCCGGACCTCTCATCCAGCACGATTCCTCTGCGGCCGCTTCTGCCGTAGCCAACGGTGGAGGTGCAGCCGCCAACGCTCCATCATCCGCAGACCCTGCCGCCGGCAACGTTCCCGGGCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTTCGCAGCCTCTGCATGAAGGGCGACGCGTGCGGGTTCTTGCACCAGTACGATAAGGCGCGGATGCCAGTGTGCCGGTTTTTCAGGCTGTATGGTGAGTGCCGCGAGCAGGATTGCGTGTACAAGCACACCAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAATCTCTGGGCCCTCCACCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAACATTTATATTCTTACAATTATAACACCTCTAACAAATTTTTCCAACAAAGGGGTGCTAGCTATACTCAACAAGTTGAAAAATCTCAGTTTCCTCAAGGAATTAATTCTACAAACCAAGGTGTGGCTGGAAAACCATTGGCAGCAGAGTCAGGAAATGTCCAGCAGCAGCAACAAGTTCAACAGTCTCAGCAGCAGGTCAGCCAGAGCCAAATGCAAAATCTTGCTAATAGCCAGCCCAATCAAGCCAATAGAACTGCAATCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAGTCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTGATATTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTACCGGGGGTAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGGAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGTCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCTCTATTGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGACAGTGAACTTATGCAGAGTCTAAACGAGAAGAAGAGAAAGCAAAGGGAGTGGATCCAGATAATGGAGGAGAAAATCCAGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTCACGTTGTAG 1383 0.4808 MEDSEGVLNFDFEGGLDAVPSAAATAVPSSAAAATASGPLIQHDSSAAASAVANGGGAAANAPSSADPAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSLGPPPPVEEVLQKIQHLYSYNYNTSNKFFQQRGASYTQQVEKSQFPQGINSTNQGVAGKPLAAESGNVQQQQQVQQSQQQVSQSQMQNLANSQPNQANRTAIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVTGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMQSLNEKKRKQREWIQIMEEKIQILSHLKTMKKRKRKKVMKRRRALVTL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3334g00010 460 ProSiteProfiles YTH domain profile. 268 403 IPR007275 GO:0003723
Gabi3334g00010 460 MobiDBLite consensus disorder prediction 199 260 - -
Gabi3334g00010 460 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 73 134 - -
Gabi3334g00010 460 Coils Coil 226 246 - -
Gabi3334g00010 460 Gene3D ph1033 like domains 245 408 - -
Gabi3334g00010 460 SUPERFAMILY CCCH zinc finger 78 108 IPR036855 GO:0046872
Gabi3334g00010 460 Gene3D - 73 135 - -
Gabi3334g00010 460 ProSiteProfiles Zinc finger C3H1-type profile. 132 159 IPR000571 GO:0046872
Gabi3334g00010 460 SMART c3hfinal6 78 104 IPR000571 GO:0046872
Gabi3334g00010 460 SMART c3hfinal6 106 132 IPR000571 GO:0046872
Gabi3334g00010 460 SMART c3hfinal6 134 158 IPR000571 GO:0046872
Gabi3334g00010 460 CDD YTH 269 403 IPR007275 GO:0003723
Gabi3334g00010 460 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 33 432 IPR045168 -
Gabi3334g00010 460 Pfam YT521-B-like domain 268 402 IPR007275 GO:0003723
Gabi3334g00010 460 ProSiteProfiles Zinc finger C3H1-type profile. 78 105 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3334g00010 Gabi-Chr3334 159350 173200 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi3334g00010 YTH 6.3e-19 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3334g00010 K14404 - gmx:100802826 717.227