Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3334g00009 ATGGAGGATTCCGAGGGAGTCCTCAACTTCGATTTTGAGGGCGGCCTCGACGCCGTACCCTCCGCCGCCGCCACCGCCGTACCCTCCTCCGCCGCTGCTGCAACCGCTTCCGGACCTCTCATCCAGCACGATTCCTCTGCGGCCGCTTCTGCCGTAGCCAACGGTGGAGGTGCAGCCGCCAACGCTCCATCATCCGCAGACCCTGCCGCCGGCAACGTTCCCGGGCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTTCGCAGCCTCTGCATGAAGGGCGACGCGTGCGGGTTCTTGCACCAGTACGATAAGGCGCGGATGCCAGTGTGCCGGTTTTTCAGGCTGTATGGTGAGTGCCGCGAGCAGGATTGCGTGTACAAGCACACCAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAATCTCTGGGCCCTCCACCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAACATTTATATTCTTACAATTATAACACCTCTAACAAATTTTTCCAACAAAGGGGTGCTAGCTATACTCAACAAGTTGAAAAATCTCAGTTTCCTCAAGGAATTAATTCTACAAACCAAGGTGTGGCTGGAAAACCATTGGCAGCAGAGTCAGGAAATGTCCAGCAGCAGCAACAAGTTCAACAGTCTCAGCAGCAGGTCAGCCAGAGCCAAATGCAAAATCTTGCTAATAGCCAGCCCAATCAAGCCAATAGAACTGCAATCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAGTCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTGATATTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTACCGGGGGTAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGGAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGTCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCTCTATTGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGACAGTGAACTTATGGCTATCTCACTTGCAGCAGAGTCTAAACGAGAAGAAGAGAAAGCAAAGGGAGTGGATCCAGATAATGGAGGAGAAAATCCAGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTCACGTTGTAGGACCAGCTGGTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCGCCTCACATGCCTCTTGGGCGTGGAGCCAGACCCATCCCTGGAATGCAAGGTTTTAACCCTGTAATGATGGGTGATGGATTATCCTATGGGCCTGTTGCACCTGATGGTTTTGGTATGCCAGATCTTTTTGGTGTAGGACCCCGAGCTTTTGCTCCCTATGGTCCAAGGTTCGCTGGTGAATTTGCAGGCCCCCCAGCACACATGATGTTTCGTGGGCGACCCTCACAACCTGGGATGTTTCCGGGTGGTGGGTTTGGGATGATGATGAATCCTGGACGTGCTCCCTTTATGGGAGGGATGGGGGTTGCTGGGACAAATCTACCAAGAGGAGGTAGGCCACTTAATATGCCTCCTATGTTTCCACCACCACCTCCCCCACCTCAGATTGCGAACCGTGTTGTCAAGAGAGATCAAAGAACTAATGATCGGAATGATAGGTTCGGTTCAGGATCAGAGCAGGGTAAGAGTCAAGACATGCTTAGTCAAAGTGGTGGACCTGATGATGACATGCAGTATCAGCAAGGATACAAGGGGCACCAGGATGATCAGTATCCTGCTGTGAACAACTCCAGGAATGACGATAGTGAAAGTGAGGATGAGGCACCTAGGCGGTCAAGACATGGAGAGGGAAAAAAGAGGAGGCGAAGCTTAGAAGATGTTAACACGAGCTCTAATCACTAG 2127 0.4922 MEDSEGVLNFDFEGGLDAVPSAAATAVPSSAAAATASGPLIQHDSSAAASAVANGGGAAANAPSSADPAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSLGPPPPVEEVLQKIQHLYSYNYNTSNKFFQQRGASYTQQVEKSQFPQGINSTNQGVAGKPLAAESGNVQQQQQVQQSQQQVSQSQMQNLANSQPNQANRTAIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVTGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISLAAESKREEEKAKGVDPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHVVGPAGQGRGRGRGMMWPPHMPLGRGARPIPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRAFAPYGPRFAGEFAGPPAHMMFRGRPSQPGMFPGGGFGMMMNPGRAPFMGGMGVAGTNLPRGGRPLNMPPMFPPPPPPPQIANRVVKRDQRTNDRNDRFGSGSEQGKSQDMLSQSGGPDDDMQYQQGYKGHQDDQYPAVNNSRNDDSESEDEAPRRSRHGEGKKRRRSLEDVNTSSNH 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3334g00009 708 Gene3D ph1033 like domains 242 406 - -
Gabi3334g00009 708 Gene3D - 74 136 - -
Gabi3334g00009 708 ProSiteProfiles YTH domain profile. 268 403 IPR007275 GO:0003723
Gabi3334g00009 708 MobiDBLite consensus disorder prediction 596 612 - -
Gabi3334g00009 708 MobiDBLite consensus disorder prediction 442 460 - -
Gabi3334g00009 708 MobiDBLite consensus disorder prediction 585 708 - -
Gabi3334g00009 708 MobiDBLite consensus disorder prediction 199 260 - -
Gabi3334g00009 708 MobiDBLite consensus disorder prediction 420 479 - -
Gabi3334g00009 708 MobiDBLite consensus disorder prediction 632 651 - -
Gabi3334g00009 708 Coils Coil 226 246 - -
Gabi3334g00009 708 Pfam YT521-B-like domain 268 402 IPR007275 GO:0003723
Gabi3334g00009 708 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 42 691 IPR045168 -
Gabi3334g00009 708 MobiDBLite consensus disorder prediction 674 702 - -
Gabi3334g00009 708 SUPERFAMILY CCCH zinc finger 78 108 IPR036855 GO:0046872
Gabi3334g00009 708 ProSiteProfiles Zinc finger C3H1-type profile. 132 159 IPR000571 GO:0046872
Gabi3334g00009 708 SMART c3hfinal6 78 104 IPR000571 GO:0046872
Gabi3334g00009 708 SMART c3hfinal6 106 132 IPR000571 GO:0046872
Gabi3334g00009 708 SMART c3hfinal6 134 158 IPR000571 GO:0046872
Gabi3334g00009 708 CDD YTH 269 403 IPR007275 GO:0003723
Gabi3334g00009 708 ProSiteProfiles Zinc finger C3H1-type profile. 78 105 IPR000571 GO:0046872
Gabi3334g00009 708 MobiDBLite consensus disorder prediction 617 631 - -
Gabi3334g00009 708 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 73 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3334g00009 Gabi-Chr3334 158440 173200 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi3334g00009 YTH 1.1e-18 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3334g00009 K14404 - gmx:100802826 1156.35