Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3333g00047 ATGAGAGTTATGGATACTAAGGTTAAGAAAGGTGGGTCTGCAACTGCAACACAGGGACAGGTGCAGCAGAATGAAAACGAGATGGGCATGAGAAAAGGTCCATGGACGGTTGATGAGGATACCATTCTCGTCAATTACATCGCCACAAACGGTGAAGGTCACTGGAATTCCGTCGCACGTTCTGCAGGTTTGAGGAGAAGTGGGAAAAGTTGCAGATTAAGATGGTTAAACTACTTGCGTCCAGATGTGCGACGTGGAAATATCACACTCCAAGAACAAATATTGATTCTTGAACTTCATTCTCGGTGGGGCAATAGGTGGTCGAAGATTGCTCAGCACATGCCAGGAAGAACAGACAATGAAATAAAAAATTATTGGAGGACCAGAGTCATGAAACAGGCGAAGCAACTCAACTGCGATGTCAACAGCAAACAGTTTAGGGACGCGTTGCGTTACGTGTGGATGCCCCGTTTGCTTGAGCGGGTTCAGCCCGCATCCCAAGTGGGCCCAGACCCAAGTGGAGTTCGGGTCTTTTTTTACAAAAACGGGTTACAAAGTTTAGAGTCAGGAGCAGAAGGGGAAAAACCGAACCGCTACTGCAGCTCAAGTGGTGCATCCTCGGACTCATCGTCCGTGGAGTTGCAAGTTCCTTCAAATTCGGACCATAGCGATTCTTCGGAACTGTTGGGTCATGATGTCTCGGTTCATAGACTTGAAAAGGGTTCGGATATATGGCCAAGTATGAATAATCAAATGTTTGAACAGGGTAATGGTGGTGGTGGTGGTGACTCATTGGAGAGTTTGTGGAACGAAGAGAATATATGGTTCTTGCAACAACAACTTAATTTCTGA 852 0.4624 MRVMDTKVKKGGSATATQGQVQQNENEMGMRKGPWTVDEDTILVNYIATNGEGHWNSVARSAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILELHSRWGNRWSKIAQHMPGRTDNEIKNYWRTRVMKQAKQLNCDVNSKQFRDALRYVWMPRLLERVQPASQVGPDPSGVRVFFYKNGLQSLESGAEGEKPNRYCSSSGASSDSSSVELQVPSNSDHSDSSELLGHDVSVHRLEKGSDIWPSMNNQMFEQGNGGGGGDSLESLWNEENIWFLQQQLNF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3333g00047 283 FunFam MYB transcription factor 89 152 - -
Gabi3333g00047 283 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Gabi3333g00047 283 SMART sant 84 132 IPR001005 -
Gabi3333g00047 283 SMART sant 31 81 IPR001005 -
Gabi3333g00047 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 79 IPR017930 -
Gabi3333g00047 283 MobiDBLite consensus disorder prediction 1 32 - -
Gabi3333g00047 283 MobiDBLite consensus disorder prediction 199 224 - -
Gabi3333g00047 283 ProSiteProfiles Myb-like domain profile. 27 79 IPR001005 -
Gabi3333g00047 283 Pfam Myb-like DNA-binding domain 85 128 IPR001005 -
Gabi3333g00047 283 Pfam Myb-like DNA-binding domain 32 79 IPR001005 -
Gabi3333g00047 283 Gene3D - 89 130 - -
Gabi3333g00047 283 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 27 219 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi3333g00047 283 Gene3D - 32 84 - -
Gabi3333g00047 283 CDD SANT 89 128 IPR001005 -
Gabi3333g00047 283 CDD SANT 34 79 IPR001005 -
Gabi3333g00047 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 134 IPR017930 -
Gabi3333g00047 283 MobiDBLite consensus disorder prediction 189 228 - -
Gabi3333g00047 283 FunFam Myb transcription factor 32 84 - -
Gabi3333g00047 283 SUPERFAMILY Homeodomain-like 28 126 IPR009057 -
Gabi3333g00047 283 MobiDBLite consensus disorder prediction 11 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3333g00047 Gabi-Chr3333 491528 493235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3333g00047 30 168 MYB Transcription Factor Family AT1G48000 73.381 4.21e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3333g00047 Myb_DNA-binding 7.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3333g00047 K09422 - gmx:778065 314.694