LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3333g00038	ATGGCATCAGCGGGTGTAGCACCTGCTTCTGGATTAAGAGACGTAAATGCAAGTTCAGTTGCAGTTGATAGGTTGCCTGATGAGATGAACAGCATGAAAATTAGGGATGATAGGGAAATGGAAGAAACTGTGGTAGACGGAAATGGGACTGAAGCAGGACATATAATTGTCACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAACAAGCTACATGGCTGAGCGTGTTGTTGGACATGGATCTTTTGGTGTTGTTTTCCAGGCAAAGTGCTTGGAGACAGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGTCTTCTGGACCACCCCAATGTTGTAACTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGATGAGCTTTATCTTAACTTGGTACTTGAGTATGTTCCTGAGACTGTCCATCGGGTGATCAGACACTACAACAAAATGAATCAAAGGATGCCATTGATCTATGTGAAACTTTATTTTTACCAGATATGTAGAGCACTAGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTGCTGGTCAATCCTCACACCCACCAGCTGAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGGTCAAAGGGGAGCCAAACATATCTTACATTTGTTCTAGGTACTATAGGGCTCCTGAACTTATATTTGGTGCAACTGAGTACACCCCAGCCATTGACATTTGGTCAGCTGGTTGTGTACTTGGAGAGCTATTGCTTGGCCAGCCTCTCTTTCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCCAACTACACTGAGTTCAAATTTCCACAAATCAAAGCTCATCCATGGCACAAGATCTTTCAAAAGCGTATGCCCCCTGAAGCTGTGGACCTTGTCTCAAGACTACTGCAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCCCTGATTCATCCATTCTTCGATGAACTGCGTGATCCAAATACCCGCTTACCAAATGGGCGTTTCCTTCCTCCACTATTCAACTTCAAAGCCAATGAGCTAAAAGGAGTGCCTGCTGAGATGCTGGTGAAACTGATTCCATCTCATGCTAGAAAGCAGTGTGCCTTGTTTGGATCATAG	1230	0.4341	MASAGVAPASGLRDVNASSVAVDRLPDEMNSMKIRDDREMEETVVDGNGTEAGHIIVTTIGGKNGQPKQTTSYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYNKMNQRMPLIYVKLYFYQICRALAYIHNCIGVSHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTPAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFQKRMPPEAVDLVSRLLQYSPNLRSTALEALIHPFFDELRDPNTRLPNGRFLPPLFNFKANELKGVPAEMLVKLIPSHARKQCALFGS	409

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3333g00038	409	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	194	206	IPR008271	GO:0004672\|GO:0006468
	Gabi3333g00038	409	ProSitePatterns	Protein kinases ATP-binding region signature.	79	103	IPR017441	GO:0005524
	Gabi3333g00038	409	Gene3D	Phosphorylase Kinase; domain 1	57	152	-	-
	Gabi3333g00038	409	FunFam	Glycogen synthase kinase-3 beta	57	152	-	-
	Gabi3333g00038	409	FunFam	Shaggy-related protein kinase kappa	153	401	-	-
	Gabi3333g00038	409	CDD	STKc_GSK3	68	360	IPR039192	-
	Gabi3333g00038	409	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	37	403	-	-
	Gabi3333g00038	409	Pfam	Protein kinase domain	73	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3333g00038	409	SMART	serkin_6	73	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3333g00038	409	SUPERFAMILY	Protein kinase-like (PK-like)	68	382	IPR011009	-
	Gabi3333g00038	409	ProSiteProfiles	Protein kinase domain profile.	73	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3333g00038	409	Gene3D	Transferase(Phosphotransferase) domain 1	153	401	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3333g00038	Gabi-Chr3333	380606	385108	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3333g00038	69	366	MAP Kinase Gene Family	AT1G73670	38.801	4.11e-57	195

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Gabi3333g00038		Pkinase	4.4e-64	CL0016