Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3333g00037 ATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAAAGCGTGGGTGTGTTGGATGTGAAGTATTTTCCAAACAAAGGGAGCAATATTCACGAGATCGGAGATGCAGATGCAATCTCGCCTCCGAGTTTTGAACGAGTTCGTGCTTCTGAATCAGTCTATGCTGAGTTACTCACTTCACAAGAAGATGTTAAGCCTGCAGACAGAATCTCAGATGCTGCTCTTGAATCTGTGGTTCTGCAATTTGTCCCATGCATCCGTTCTGGTAGTTTTTCTGACATTGGGCCACGAAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCTTCTTATTTGGGATCACCATACAACTTTCCTAAGCCCAGTGCCTTTTATGGGGTGTTTGATGGTCATGGAGGACCTGAAGCTGCAGCTTATGTAAGAAAAAACGTGATAAAATTCTTCTTTGAGGATGTCAATTTCCCCCAGACATCTGAAGTTGATAATGTATTTTTACAAGAGTTAGAGAATTCCCTCAGAAAGGCATTTCTTTTGGCTGACTCAGCTTTGGCCGATGATTGCAGTGTCAATACTTCATCAGGAACTACGGCCCTTACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCCAATGCGGGTGACTGCCGAGCAGTTCTGTGTCGTAAAGGAGAGGCCATTGACATGTCTAAAGATCACAGGCCTATTTATCCATCAGAGCGTAGGAGAGTTGAAGAATTGGGGGCTTACATAGATGATGGTTATCTCAATGGGGTTTTATCCGTTACTCGAGCACTAGGGGACTGGGACATGAAGTTACCTAAGGGTGCTCCTTCACCTTTGATTGCGGAACCTGAGTTCCAGCAAGTGATTCTAACAGAGGATGATGAATTCCTCATCATAGGATGCGATGGAATCTGGGATGTAATGTCAAGTCAGCATGCTGTTAGCCTTGTACGCAGAGGCCTAAGACGGCACGATGACCCGGAGAAGTGTGCTAGGGACCTGGTTATGGAGGCATTACGCCTTAACACATTTGACAATCTCACAGTGATCATTGTATCCTTCTCTTCACTTGACCACATGGAGCCAGAGTCATCCCCACCTCGCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGCTTGTTGGAAGGCAGTGCTAGCAACTGA 1191 0.4551 MVAEAEVVCQQSVGVLDVKYFPNKGSNIHEIGDADAISPPSFERVRASESVYAELLTSQEDVKPADRISDAALESVVLQFVPCIRSGSFSDIGPRRYMEDEHIRIDDLSSYLGSPYNFPKPSAFYGVFDGHGGPEAAAYVRKNVIKFFFEDVNFPQTSEVDNVFLQELENSLRKAFLLADSALADDCSVNTSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSKDHRPIYPSERRRVEELGAYIDDGYLNGVLSVTRALGDWDMKLPKGAPSPLIAEPEFQQVILTEDDEFLIIGCDGIWDVMSSQHAVSLVRRGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVSFSSLDHMEPESSPPRQRKLRCCSLSAEALCSLRSLLEGSASN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3333g00037 396 PANTHER PROTEIN PHOSPHATASE 2C 74 354 IPR015655 GO:0004722|GO:0006470
Gabi3333g00037 396 Gene3D - 77 361 IPR036457 -
Gabi3333g00037 396 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Gabi3333g00037 396 SUPERFAMILY PP2C-like 79 357 IPR036457 -
Gabi3333g00037 396 CDD PP2Cc 84 355 IPR001932 -
Gabi3333g00037 396 SMART PP2C_SIG_2 100 355 IPR001932 -
Gabi3333g00037 396 SMART PP2C_4 74 353 IPR001932 -
Gabi3333g00037 396 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Gabi3333g00037 396 FunFam Probable protein phosphatase 2C 22 69 358 - -
Gabi3333g00037 396 Pfam Protein phosphatase 2C 95 347 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3333g00037 Gabi-Chr3333 365818 368526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3333g00037 98 392 PP2C-type Phosphatase Gene Family AT3G62260 70.608 6.93e-153 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Gabi3333g00037 PP2C 8.1e-65 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3333g00037 K14803 - gmx:100819791 723.391