Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3333g00036 ATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAAAGCGTGGGTGTGTTGGATGTGAAGTATTTTCCAAACAAAGGGAGCAATATTCACGAGATCGGAGATGCAGATGCAATCTCGCCTCCGAGTTTTGAACGAGTTCGTGCTTCTGAATCAGTCTATGCTGAGTTACTCACTTCACAAGAACCTGCAGACAGAATCTCAGATGCTGCTCTTGAATCTGTGGTTCTGCAATTTGTCCCATGCATCCGTTCTGGTAGTTTTTCTGACATTGGGCCACGAAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCTTCTTATTTGGGATCACCATACAACTTTCCTAAGCCCAGTGCCTTTTATGGGGTGTTTGATGGTCATGGAGGACCTGAAGCTGCAGCTTATGTAAGAAAAAACGTGATAAAATTCTTCTTTGAGGATGTCAATTTCCCCCAGACATCTGAAGTTGATAATGTATTTTTACAAGAGTTAGAGAATTCCCTCAGAAAGGCATTTCTTTTGGCTGACTCAGCTTTGGCCGATGATTGCAGTGTCAATACTTCATCAGGAACTACGGCCCTTACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCCAATGCGGGTGACTGCCGAGCAGTTCTGTGTCGTAAAGGAGAGGCCATTGACATGTCTAAAGATCACAGGCCTATTTATCCATCAGAGCGTAGGAGAGTTGAAGAATTGGGGGCTTACATAGATGATGGTTATCTCAATGGGGTTTTATCCGTTACTCGAGCACTAGGGGACTGGGACATGAAGTTACCTAAGGGTGCTCCTTCACCTTTGATTGCGGAACCTGAGTTCCAGCAAGTGATTCTAACAGAGGATGATGAATTCCTCATCATAGGATGCGATGGAATCTGGGATGTAATGTCAAGTCAGCATGCTGTTAGCCTTGTACGCAGAGGCCTAAGACGGCACGATGACCCGGAGAAGTGTGCTAGGGACCTGGTTATGGAGGCATTACGCCTTAACACATTTGACAATCTCACAGTGATCATTGTATCCTTCTCTTCACTTGACCACATGGAGCCAGAGTCATCCCCACCTCGCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGCTTGTTGGAAGGCAGTGCTAGCAACTGA 1182 0.456 MVAEAEVVCQQSVGVLDVKYFPNKGSNIHEIGDADAISPPSFERVRASESVYAELLTSQEPADRISDAALESVVLQFVPCIRSGSFSDIGPRRYMEDEHIRIDDLSSYLGSPYNFPKPSAFYGVFDGHGGPEAAAYVRKNVIKFFFEDVNFPQTSEVDNVFLQELENSLRKAFLLADSALADDCSVNTSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSKDHRPIYPSERRRVEELGAYIDDGYLNGVLSVTRALGDWDMKLPKGAPSPLIAEPEFQQVILTEDDEFLIIGCDGIWDVMSSQHAVSLVRRGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVSFSSLDHMEPESSPPRQRKLRCCSLSAEALCSLRSLLEGSASN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3333g00036 393 SMART PP2C_4 71 350 IPR001932 -
Gabi3333g00036 393 Pfam Protein phosphatase 2C 92 344 IPR001932 -
Gabi3333g00036 393 ProSiteProfiles PPM-type phosphatase domain profile. 82 352 IPR001932 -
Gabi3333g00036 393 PANTHER PROTEIN PHOSPHATASE 2C 74 351 IPR015655 GO:0004722|GO:0006470
Gabi3333g00036 393 FunFam Probable protein phosphatase 2C 22 66 355 - -
Gabi3333g00036 393 SUPERFAMILY PP2C-like 76 354 IPR036457 -
Gabi3333g00036 393 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
Gabi3333g00036 393 CDD PP2Cc 81 352 IPR001932 -
Gabi3333g00036 393 Gene3D - 72 358 IPR036457 -
Gabi3333g00036 393 SMART PP2C_SIG_2 97 352 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3333g00036 Gabi-Chr3333 365818 368526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3333g00036 95 389 PP2C-type Phosphatase Gene Family AT3G62260 70.608 4.99e-153 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Gabi3333g00036 PP2C 7.9e-65 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3333g00036 K14803 - gmx:100819791 712.22