Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3333g00028 ATGGAAGCTAGATTTGGTGCAGAGGCTTATCATTTTTATGGTGTGGGTGCTTCCTCAGGTATGGGGAAGAGGTCTTCAGAATGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTCATAGCTAGCCGGGTGAATCCGGTGGCTTCAGATGGTGTGGGAGTGGGACAACAATTTTTCCCTCTTGGGTCCGGGATCCCGGTGGCTGGGGGTTCCTCTAACAGCTCTTCTTCCTGCTCTGAGGAAGTAGATCTTAGGAATCCCAACGGGAACAAGGAAGGGGAGAAGAAAAGGAGAGTTATTGTGTTGGAAGATGATGGTTTGAATGAGGAAGCAGGTACCCTTAGCTTAAAGCTTGGTGGGCATGGTTCTCCTATGGTGGATAGGGAGATTGCTAGCTGGGATGGTATGAATGGGAAGAAGAGCAGAGTAGCTGGAGGTACTTCGAATCGAGCTGTTTGTCAAGTGGAGGACTGTGGTGCGGATCTGAGCAAAGCTAAGGATTACCACAGACGTCATAAAGTTTGTGAGATGCATTCTAAGGCAAGTAGGGCGCTCGTGGGAAATGCAATGCAGAGGTTCTGTCAACAATGTAGTAGGTTTCACATGCTTCAAGAGTTCGATGAAGGAAAGAGAAGCTGTCGAAGACGCTTGGCAGGCCATAATAAACGAAGAAGGAAAACAAATCATGAAGTTGTTCCTAATGGAACTTCACTAAATGATGATCAGACTAGTAGTTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGACTACAGATCAGGATCTACTAACTCATCTTCTAAGGAACCTTGCTAGGCAGAATAGTGAACAAGGGGGGAAGAACTTGTCTAACCTTTTGCGGGAACCAGAGAATTTATTGAAAGAAGGGGGTTCATCTAGGACGTCAGAGATGGTTTCAACTTTATTCTCCAATGGTTCTCAAGGCTCTCCAACTGTTATAAGACAACATCAAACTGTATCTATGACTAAAATGCAACAAGTGATGCAGACACATGATGCTAGGGCTGCTGATCAGCAAACCATGTCTTCTATAAAGCCCAGCATTTCAAACAGTCCTCCTATTTACTCAGAAGCCAGAGACAGTACTACTGGACAGATCAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGCATGGAAGATATAGAAAGATTGCCTGTCTCTACAAATCTTGGGACTAGCTCTCTTGATTACCCATGGACACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACGAGTGGAAATTCAGATTCTGCATCTGCGCAGTCCCCTTCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAACTCTTCGGCAAAGATCCGAATGATTTTCCACTTTTACTTAGAGCACAGATTATTGACTGGTTATCCCACAGTCCTACCGATATTGAGAGCTACATACGACCTGGTTGTATTGTTTTGACCCTTTATCTGCGTCAGGCTGAGGCTGTGTGGGAGGAACTTTGCTACGATCTGACCTCCAGTTTAAATAGGCTGTTGGATGTCTCAGATGATACTTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCCTTCATTCTCAATGGTCAAGTTGTCATAGATACATCCCTACCTTTCAGAAGGAACCATTATAGTAAGATTTTGACTGTTAGTCCAATTGCCGTACCAGCATCAAAGAGAGCTCAATTTTCTGTTAAGGGGGTCAACCTGATACGCCCTGCCACTAGGTTAATGTGTGCTTTGGAAGGGAAATATCTGGTCTGTGAAGATGCTCACGAGTCAACAGATCAATACTCCAAGGAGCTTGATGAACATCAATGCATCCAGTTTTCATGTTCTGTCCCTGAGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTCTTTCCTTTCATAGTTGTGGAGGAGGATGTTTGCTCAGAAATCTGCGTGCTCGAGTCCCTACTAGAATTAAGTGAAACTGATCCAGATATTGAAGGAACTGGAAAAATTAAAGCCAAAAGTCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAATTGAAATCTAGGATGGTTCACTTGAACGCAAGTGCTGATCTCTTTCCATTAGAACGGTTTAAGTGGCTTATGGAGTTTTCTATGGACCGTGATTGGTGTGCAGTAGTAAAAAAACTGTTGAACTTACTGCTTGCTGGAACTGTGAATACCGGAGATCACCCTTCCCTGGATGTTGCACTTTCAGAGATGGGTCTCCTTCACAGAGCTGTAAGGAGAAATAGCAAGCAGTTAGTGGAGCTGCTTTTGGGATATGTTCCTGAGAATATTTCCGATAGACTAGGAACTGAAGACAAGCCACTAGTTGATGGAGAGAATCAGAGCTTCTTGTTTAGACCTGATGTTGTTGGTCCTGGTGGTTTGACACCAGTCCATATTGCAGCTGGGAAAGATGGTTCTGAGGATGTACTGGACGCTTTAACTAATGATCCTTCCATGGTGGGAATTGAGGCATGGAAGAATGCTCGTGACAGCACAGGCTCCACACCTGAGGATTATGCACGTTTACGGGGTCATTATACTTACATTCACTTGGTGCAGAAAAAAATTAACAAGAGACAAGGAGCAGCTCATGTGGTGGTTGAGATTCCCAGCAATCTTACAGAGTGCAATGCAAAGCAGAAGCAAAATGAGTTGTCCACCTGCTTCGAGATTGCGAAGGCTGAAGAAAGACGTGGCCAAGGGCACTGTAAACTTTGTGATACTAAAATTTCTTGTAGAACTGCAGTAGGCAGGTCTTTGGTATACAGGCCTGCAATGCTCTCAATGGTGGCCATAGCAGCAGTCTGTGTCTGTGTGGCCCTTCTGTTCAAAACATCACCCACTGTCCAATATATGTTCCGACCCTTCAGATGGGAATCTTTGGATTTTGGAACAAGCTAA 3033 0.4388 MEARFGAEAYHFYGVGASSGMGKRSSEWDLNDWRWDGDLFIASRVNPVASDGVGVGQQFFPLGSGIPVAGGSSNSSSSCSEEVDLRNPNGNKEGEKKRRVIVLEDDGLNEEAGTLSLKLGGHGSPMVDREIASWDGMNGKKSRVAGGTSNRAVCQVEDCGADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNHEVVPNGTSLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHLLRNLARQNSEQGGKNLSNLLREPENLLKEGGSSRTSEMVSTLFSNGSQGSPTVIRQHQTVSMTKMQQVMQTHDARAADQQTMSSIKPSISNSPPIYSEARDSTTGQIKMNNFDLNDIYIDSDDGMEDIERLPVSTNLGTSSLDYPWTQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLLLRAQIIDWLSHSPTDIESYIRPGCIVLTLYLRQAEAVWEELCYDLTSSLNRLLDVSDDTFWRTGWVHIRVQHQMAFILNGQVVIDTSLPFRRNHYSKILTVSPIAVPASKRAQFSVKGVNLIRPATRLMCALEGKYLVCEDAHESTDQYSKELDEHQCIQFSCSVPEMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICVLESLLELSETDPDIEGTGKIKAKSQAMDFIHEMGWLLHRSQLKSRMVHLNASADLFPLERFKWLMEFSMDRDWCAVVKKLLNLLLAGTVNTGDHPSLDVALSEMGLLHRAVRRNSKQLVELLLGYVPENISDRLGTEDKPLVDGENQSFLFRPDVVGPGGLTPVHIAAGKDGSEDVLDALTNDPSMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGAAHVVVEIPSNLTECNAKQKQNELSTCFEIAKAEERRGQGHCKLCDTKISCRTAVGRSLVYRPAMLSMVAIAAVCVCVALLFKTSPTVQYMFRPFRWESLDFGTS 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3333g00028 1010 SUPERFAMILY SBT domain 152 233 IPR036893 GO:0003677|GO:0005634
Gabi3333g00028 1010 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677
Gabi3333g00028 1010 Gene3D - 751 913 IPR036770 -
Gabi3333g00028 1010 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 72 897 IPR044817 GO:0003677
Gabi3333g00028 1010 MobiDBLite consensus disorder prediction 415 456 - -
Gabi3333g00028 1010 SUPERFAMILY Ankyrin repeat 781 894 IPR036770 -
Gabi3333g00028 1010 Gene3D - 145 215 IPR036893 GO:0003677|GO:0005634
Gabi3333g00028 1010 MobiDBLite consensus disorder prediction 71 98 - -
Gabi3333g00028 1010 MobiDBLite consensus disorder prediction 356 379 - -
Gabi3333g00028 1010 MobiDBLite consensus disorder prediction 71 85 - -
Gabi3333g00028 1010 MobiDBLite consensus disorder prediction 219 238 - -
Gabi3333g00028 1010 Pfam SBP domain 154 227 IPR004333 GO:0003677
Gabi3333g00028 1010 FunFam Squamosa promoter-binding-like protein 14 145 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3333g00028 Gabi-Chr3333 331119 340234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3333g00028 1 1010 SBP-box Gene Family AT3G60030 55.102 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi3333g00028 SBP 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3333g00028 - - gmx:100809806 1724.52