Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3333g00027 ATGCTTAGTTGTAGAAATGCAAAAAAAAATTCCTTGTTACTAAATAATACACAAGTAACGCATTCCTATTCCAATTCAAAGCAGAGTCAACAACTAGTTCCACCCCTTTATCCTACGCACTCCTCTCTGCTTATCCTGCGCATCTTTCACCGGTTTCGGAACCGAGATCCTCAACTACGCTCTTTAACACCTCACTCCCCACCGCTCTTTGCTCTCAACTCTCCAATTTTGCTATTTCATTTATCTCAGCGGGAAAGAATCATGAGTTGTTTCAGTTGTTGCGAAGAGGGTGACTTCCCTAAGGCTGCTGAAAGCGGAGGACCATATGTCGTAAAAAATTCTGCAGGGAATGATGGAAATTATCATGCTTCTGAAACTGCAAAGCAGGGGGCTCAGACTGTTAAAGTCCAGCCCATTGAAGTTCCTGATATACCAGCAGATGAACTAAAAGAAGTTACTGATAACTTTGGGCAAGATTCTCTGATTGGAGAGGGATCTTATGGAAGAGTATATTATGGCGTTCTTAAAAGTGGGCAGGCTGCGGCAGTCAAGAAGTTAGATGCCAGTAAACAGCCTGATGAGGAATTTTTAGCCCAGGTTTCAATGGTATCAAGGCTGAAGCATGAAAATTTTGTTCAGTTGCTTGGATATTGTGTTGATGGAAACTCCCGTATTCTTGCTTATGAGTTTGCATCTAATGGGTCACTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCAGAGCCTGGTCCTGTTTTGACATGGGCGCAGAGAGTAAAAATTGCTGTAGGGGCTGCAAGAGGGCTTGAATACTTGCATGAGAAGGCTGATCCCCACATTATCCACCGGGACATCAAGTCAAGCAATGTGCTAATATTTGATGATGATGTTGCTAAAATTGCAGATTTTGATTTATCAAACCAGGCTCCTGACATGGCTGCGCGTCTTCATTCCACTCGTGTTCTTGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGACAATTGAATGCTAAGAGTGATGTATACAGTTTTGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAACCTGTTGATCATACACTACCACGTGGACAACAGAGTCTGGTTACTTGGGCTACACCAAAACTCAGTGAGGATAAAGTCAGGCAATGTGTTGATTCAAGACTAGGAGGAGAATACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCACTGTGCGTGCAATATGAAGCTGATTTCAGACCCAACATGAGCATTGTAGTAAAAGCTCTTCAACCTTTGTTGACTGCCCGACCTGGACCTGCTGGTGAAACACCAAATTAA 1347 0.4313 MLSCRNAKKNSLLLNNTQVTHSYSNSKQSQQLVPPLYPTHSSLLILRIFHRFRNRDPQLRSLTPHSPPLFALNSPILLFHLSQRERIMSCFSCCEEGDFPKAAESGGPYVVKNSAGNDGNYHASETAKQGAQTVKVQPIEVPDIPADELKEVTDNFGQDSLIGEGSYGRVYYGVLKSGQAAAVKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGNSRILAYEFASNGSLHDILHGRKGVKGAEPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDSRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARPGPAGETPN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3333g00027 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672|GO:0006468
Gabi3333g00027 448 ProSitePatterns Protein kinases ATP-binding region signature. 162 185 IPR017441 GO:0005524
Gabi3333g00027 448 FunFam pto-interacting protein 1 232 443 - -
Gabi3333g00027 448 SMART serkin_6 156 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3333g00027 448 Gene3D Transferase(Phosphotransferase) domain 1 231 440 - -
Gabi3333g00027 448 CDD STKc_IRAK 162 435 - -
Gabi3333g00027 448 ProSiteProfiles Protein kinase domain profile. 156 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3333g00027 448 Gene3D Phosphorylase Kinase; domain 1 117 230 - -
Gabi3333g00027 448 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 91 438 - -
Gabi3333g00027 448 Pfam Protein tyrosine and serine/threonine kinase 160 432 IPR001245 GO:0004672|GO:0006468
Gabi3333g00027 448 FunFam PTI1-like tyrosine-protein kinase 3 120 230 - -
Gabi3333g00027 448 SUPERFAMILY Protein kinase-like (PK-like) 136 432 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3333g00027 Gabi-Chr3333 313334 317432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3333g00027 147 433 Receptor kinase-like Gene Family AT4G02010 51.546 5.81e-91 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Gabi3333g00027 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3333g00027 K13436 - gmx:100808383 676.011