Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3333g00026 ATGGTGAATAAAGTGCTTGTCTCTGGTGTTTCCCTCATCCTGGTGGTGGGTGTTGCCATAGGTGTTGTTTCTGTTGTTAATAATAAAAAAGAAGATCCTGAGGTAGCAGCTCATCAAAAATCTGTGAAGTCAATGTGCCAAGGCACTGATGACCAGAAGCTTTGTTATGACACTCTTAGCTCTGCGAAAGCCTCCAATTCCTCAGACCCAAAAGTATACATAGCAACTGCAGTGGAAGCAAGTTTCAAAAGCGTGATCCAAGCCTTGAACATGAGTGACAGGCTCTCAGTGGAGCATGGAAACAATAACCCTAGCATCAAGATGGCCCTCGATGACTGCAAGGACTTAATGCAATTCGCCCTTGACAGCCTCGAAGCCTCAGCTAATTTGGTTCGTGACAACAACATGCAAGCAATTCATGACCAAACCCCTGACTTCAGGAACTGGTTGAGTGCTGTTATCTCGTACCAGCAGTCATGCATGGAAGGTTTTGATGATGAGAAAGACGGTGAGACAAAGGTTAAGGAACAGTTGCAAACGGATAGTTTGGACCAAATGGGAAAGCTCACTGGCATAACTCTTGACATTGTCACTGATTTAGCCAACATTCTTCAGAACTTTGACTTGAAGTTGGATTTGAATCCTGCATCTCGTCGTCTTCTGGAAGCTGATGAGGTCGACCATGAAGGATTACCCACATGGTTCTCACCTGCAGATAGAAAGCTCTTGGGTAAGGTGCATAATGGAGGAGGTCAAGTCACACCAAACGCTGTTGTTGCCAAGGATGGAAGTGGTAAATTTAAAACCGTAAAGCAAGCTATTGACTCATATCCTAAGGGCTTCAAAGGCAGATACATTATCTATGTTAAGGCTGGGGTCTATGACGAGTACATCACCATTCCTAAACAGTCAGCTAATATTCTTATGTATGGTGATGGCCCTACAAAAACCATTATCACTGGTCATAAAAACTTCGTAGATGGTGTGAAGACAATGCAAACTGCCACCTTCGCGAATGTTGCACCTGGATTCATTGCCAAGTCTATGGCATTTGAGAACACAGCTGGTCCTAGTAAACACCAAGCAGTGGCATTTAGAAACCAGGGAGATATGTCTGCTTTTTTCGATTGTGCCATGCATGGTTTTCAGGACACCTTGTACGTTCAAGCGAATCGTCAATTCTACCGCAACTGTGAAATATCTGGTACCGTTGACTTCATCTTCGGTACATCACCGACATTGATTCAGAATTCTAGAATCATTGTGAGGAAGCCAAATCCTAATCAATTCAACACAGTGACCGCAGATGGCACATCACAAAAGAACATGGCCACAGGGATTGTAATCCAGAATTGCGAGATCGTGCCAGAGAGGGCTCTATTCCCTGAAAGGTTACAATTTAAAAATTACTTGGGGAGGCCATGGAAGCAGTATGCTAGAACAGTGGTTATGGAATCCAACATCGGTGACTTAATTGCGCCAGAAGGGTGGAGTGTTTGGAGTGGGAACCAATTTCTTGATACATTGTACTATGCTGAGCATGCTAATGTGGGAGCTGGTGCCAATCTTCAAAAAAGGGTGAAGTGGAAGGGTTACCATGCAAACATTAATAACAATGAAGCTGCGAGATTCACTGCTGGACAATTCCTAAGAGCTGGACCTGCTGGAAGAGCTGAGGATTGGTTGAAGGCTACTGGCATTCCTTACGACATTGGCTTCACAAAATAG 1728 0.4416 MVNKVLVSGVSLILVVGVAIGVVSVVNNKKEDPEVAAHQKSVKSMCQGTDDQKLCYDTLSSAKASNSSDPKVYIATAVEASFKSVIQALNMSDRLSVEHGNNNPSIKMALDDCKDLMQFALDSLEASANLVRDNNMQAIHDQTPDFRNWLSAVISYQQSCMEGFDDEKDGETKVKEQLQTDSLDQMGKLTGITLDIVTDLANILQNFDLKLDLNPASRRLLEADEVDHEGLPTWFSPADRKLLGKVHNGGGQVTPNAVVAKDGSGKFKTVKQAIDSYPKGFKGRYIIYVKAGVYDEYITIPKQSANILMYGDGPTKTIITGHKNFVDGVKTMQTATFANVAPGFIAKSMAFENTAGPSKHQAVAFRNQGDMSAFFDCAMHGFQDTLYVQANRQFYRNCEISGTVDFIFGTSPTLIQNSRIIVRKPNPNQFNTVTADGTSQKNMATGIVIQNCEIVPERALFPERLQFKNYLGRPWKQYARTVVMESNIGDLIAPEGWSVWSGNQFLDTLYYAEHANVGAGANLQKRVKWKGYHANINNNEAARFTAGQFLRAGPAGRAEDWLKATGIPYDIGFTK 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3333g00026 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Gabi3333g00026 575 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Gabi3333g00026 575 CDD PMEI-like_3 44 202 - -
Gabi3333g00026 575 FunFam Pectinesterase 251 573 - -
Gabi3333g00026 575 Pfam Pectinesterase 256 551 IPR000070 GO:0030599|GO:0042545
Gabi3333g00026 575 SMART PMEI_2 37 196 IPR006501 GO:0004857
Gabi3333g00026 575 FunFam Pectinesterase 38 201 - -
Gabi3333g00026 575 Gene3D - 250 573 IPR012334 -
Gabi3333g00026 575 SUPERFAMILY Pectin lyase-like 254 571 IPR011050 -
Gabi3333g00026 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 200 IPR035513 -
Gabi3333g00026 575 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Gabi3333g00026 575 PANTHER PECTINESTERASE 18 563 - -
Gabi3333g00026 575 NCBIfam pectinesterase inhibitor domain 22 199 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3333g00026 Gabi-Chr3333 309171 311428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3333g00026 1 573 Carbohydrate Esterase AT2G47030 40.429 1.83e-139 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3333g00026 K01051 - gmx:100775246 892.493