Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3333g00025 ATGGAAAAAAAAAGACTTGCCTCTCTCGCTTCTCTATGTCTCGTAGTAGGTGTTGTTGCCCTAGGCGTTGTTGCTCTTGTCCGCACCAACCAAAACGGCGAAGATACAAGCAAAAACGACGGAAAGGAATTGAGCACTCACACTAAAACTGTGAAAGCCATGTGCCAAGACACCGACGACCAAAAGCTTTGCATTGACACACTCAGCCCTATCAACGCCTCAGACCCAACGGAATACGTCAAAACGGTGGTTCAAACCTCCATGGACAGCGTAATCAAAGCCTTCAATATGAGTGACAGGCTCACGTTGGAAAATGGAAAGAAAGACCCTAGCATCAAGATGGCCCTTGAGGATTGCAAGGACTTGTTACAATTCGCTATTGACGAATTAGAGGCCTCAAGTATTGTTGTTCGTGACAGCAACGTAAACAACGTTAATGAACATGCTGCAGACATTAAAAACTGGTTGGGCGCTGTCATTGCGTACCAACAATCGTGTCTTGATGGGTTTGACACAGACGCTGAGAGGAAGATCCAAACACAGTTGCAAACAGGTAGTTTGGACGAAGTGGGGAAGCTTACTGCAATAGCACTTGATATTGTGTCTGGAATCACCAAAATACTCTCTGCTGTGGACTTGAATTTGAATATAAAACCTGCATCTCGTCGCCTTCTTGAGGTGGATCAAGATGGGTATCCATATTGGATGAACGTTGGAGATCGTAAGCTGTTGTCTGAAATGAAAAAGGGAGGTTCGGTGGCACCCAATGCAGTTGTTGCCAAGGATGGTAGTGGACAATATAAGACTGTTCTTGATGCTATTAATGCTTACCCTAAGACTCAAAAAGGAAGATATGTTATCTATGTTAAGGCTGGTGTCTATGATGAGTATATTTCCGTTGATAAGAAGAAGCCGAATATACTAATTTACGGTGATGGCCCTACAAAGACCATTATCACTGGTAGTAAAAACTTCGTTGATGGTTGGAAGACTATGAGATCTGCTACCTTCTCCACCGTAGCGGAAGACTTCATTGCCAAGTCAATGGCATTCGAGAACACAGCTGGAGCCAACAAACACCAAGCAGTGGCACTTCGTGTGCAAGGTGATCGCTCGGCATTCTTCGACTGCGCCATACGAGGTTATCAAGACACATTATACGCACACGCCCACCGTCAGTTCTACCGGAACTGCGAAATCTCAGGCACAGTGGATTTCATCTTCGGCTACGCCACCACACTAATCCAAAGCTCCAAGATCATAGTGAGGAAGCCTGATCCAAATCAACGAAACATAGTGGTAGCTGATGGCACAGACCAAAAGAACATGCCAACAGGGGTTGTTCTTCAGAATTGTCAGATAATGCCAGAGGCTAACCTCATGGCCGATAGGTTGACTGTGAGGTCTTACTTGGCGAGGCCATGGAAGGCATACTCAAGAGCAATCATCATGGAAAGTACAATTGGTGATCTCATTCAACCAGATGGTTTTCTTCCATGGCAAGGTAATCAATTCCTTGACACGTGTTTCTTTGCTGAGTATGGTAACACTGGAGCTGGTGCCAATGTTAAAACAAGGGTCAAGTGGGGACGTGGAGTTCTTAGTAAGAATGATGCTGCTCGATACACTGCTGACCAATGGCTTCAAGCAAATACATGGTTGCCTGCTACTGGCATACCTTTCGATCCTAGCTTCACTAAAGCTTGA 1707 0.4523 MEKKRLASLASLCLVVGVVALGVVALVRTNQNGEDTSKNDGKELSTHTKTVKAMCQDTDDQKLCIDTLSPINASDPTEYVKTVVQTSMDSVIKAFNMSDRLTLENGKKDPSIKMALEDCKDLLQFAIDELEASSIVVRDSNVNNVNEHAADIKNWLGAVIAYQQSCLDGFDTDAERKIQTQLQTGSLDEVGKLTAIALDIVSGITKILSAVDLNLNIKPASRRLLEVDQDGYPYWMNVGDRKLLSEMKKGGSVAPNAVVAKDGSGQYKTVLDAINAYPKTQKGRYVIYVKAGVYDEYISVDKKKPNILIYGDGPTKTIITGSKNFVDGWKTMRSATFSTVAEDFIAKSMAFENTAGANKHQAVALRVQGDRSAFFDCAIRGYQDTLYAHAHRQFYRNCEISGTVDFIFGYATTLIQSSKIIVRKPDPNQRNIVVADGTDQKNMPTGVVLQNCQIMPEANLMADRLTVRSYLARPWKAYSRAIIMESTIGDLIQPDGFLPWQGNQFLDTCFFAEYGNTGAGANVKTRVKWGRGVLSKNDAARYTADQWLQANTWLPATGIPFDPSFTKA 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3333g00025 568 Gene3D - 250 565 IPR012334 -
Gabi3333g00025 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 204 IPR035513 -
Gabi3333g00025 568 PANTHER PECTINESTERASE 19 555 - -
Gabi3333g00025 568 Pfam Pectinesterase 256 550 IPR000070 GO:0030599|GO:0042545
Gabi3333g00025 568 Pfam Plant invertase/pectin methylesterase inhibitor 50 200 IPR006501 GO:0004857
Gabi3333g00025 568 FunFam Pectinesterase 47 205 - -
Gabi3333g00025 568 SMART PMEI_2 46 200 IPR006501 GO:0004857
Gabi3333g00025 568 FunFam Pectinesterase 251 565 - -
Gabi3333g00025 568 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Gabi3333g00025 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 204 IPR035513 -
Gabi3333g00025 568 NCBIfam pectinesterase inhibitor domain 44 202 IPR006501 GO:0004857
Gabi3333g00025 568 CDD PMEI-like_3 53 206 - -
Gabi3333g00025 568 SUPERFAMILY Pectin lyase-like 253 562 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3333g00025 Gabi-Chr3333 301464 304370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3333g00025 8 561 Carbohydrate Esterase AT3G05610 40.787 1.89e-141 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3333g00025 K01051 - gmx:100820142 874.389