Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3333g00024 ATGCAAGTTCTGGTGGTTGGTGCCGTTATCGGCGGCGTCGTCGTCGGAGTCGGACGCAATCAGAAAACCAATGAAAACGGTGGCGGTGAAGGTGTTAGCACACACAGCAAGGCCGTGAAGGCATTGTGCCAAAACGCAGACGACCAGAATCTTTGCCATGAAGTCCTCAACCCTGTGGACACCTCAGACCCAAAGGACTACATCGAAACGGTGGTGAAAACCACAATGGACAGCGTCGTCAAAGCTTTCAACATGAGTGATAGGCTCTCGGTGGAGCATGGTAATAGCAAACCAGGCATCAAGATGGCCCTTGAAGATTGCAAGGACTTGTTGCAATCTGCAATTCACGAACTCGAAGCCTCAGGTCTTTTGGTTCGTGAGAGCACAATTCAGGATGTTAACGAACGTGCTTCGGATCTCAAGAATTGGTTGGGTGCTGTTGTTGCTTACCAACAATCTTGCCTTGATGGTTTCGACACAGACGGTGAGAAGAAGGTTCAGGAACAGTTGCAAACAGGTAGCTTGGACAACGTTGGTAAGATCACTGGTTTGGCACTTGATGTCGTGTCTGGAGTCTCCAATGTCCTCGGTGCATTTAACTTGAACTTGAATCTTAAACCTGCTTCTCGTCGCCTTCTTGAGGTGGATCAAGAGGGTTACCCAACTTGGTTCTCCGCTGCTGATCGTAAGCTTTTGGGTCAGTTCAGCAGCAAAGGATCCCAACATGGTGGACAAGGTGGAATTATACCTAATGCTGTTGTTGCCAAGGATGGAAGTGGCCAATATAAGACTGTTCTTGATGCTATTAACTCTTACCCTAAGAACCACCAAGGTAAATTCCTTATCTACGTTAAGGCTGGTGTCTACGATGAGTACATTACCGTTGACAAGAAGAAGCCGAATATTCTCTTGTACGGTGATGGCCCCACAAAGACCATCATCACCGGACGCAAGAACTTCAACGAGGGTACCAAGACAATGAGAACCGCCACCTTCACCACTCTTGCTGATGATTTCATTGCCAAGTCAATTGCATTCGAGAACACCGCTGGTCCTCAGGGTCACCAAGCTGTGGCACTTCGCGTTCAAGGTGATCGTTCAGCATTCTTTGATTGCGCAATGCGTGGTTACCAAGACACATTGTATGCTCACGCTCACCGTCAATACTACCGCAACTGTGAAATCTCCGGAACCGTCGATTTCATTTTTGGCTACGCCACGACCTTGATCCAGAACTCCAAGATCATTGTGAGGAGGCCTGGTCCAAATCAACAGAACATAGTGGTTGCTGATGGGACAGACCAAAAGAGCATGCCAACAGGAGTAGTCATGCAAAACAGTGAGATCATGCCAGAGGCTGCCCTCTTCAACGACAGGTTGACAGTGAAGTCTTACTTGGCAAGGCCATGGAAGGCATTTTCAAGGGCAGTTTTCATTGAGAATGTTATTGGTGACTTGATTCAGCCAGAAGGGTATATTCCATGGGCACCACCAAATGAACCAAACACTCAGAACGCTTACTTTGCTGAGTTTGCCAACACTGGACCAGGTGCCAATACTCAAAGTAGGGCTAAATGGGGAAAAGGTCTCATTAGCAAGACTGAGGCTGCAAAATTCACTGCTGAACAGTGGATCCAAGCTAGCTCTTGGTTGCCAGCCACTGGCATTCCTTTCGATGCTGGCTTCACCAAAGCTTAA 1698 0.48 MQVLVVGAVIGGVVVGVGRNQKTNENGGGEGVSTHSKAVKALCQNADDQNLCHEVLNPVDTSDPKDYIETVVKTTMDSVVKAFNMSDRLSVEHGNSKPGIKMALEDCKDLLQSAIHELEASGLLVRESTIQDVNERASDLKNWLGAVVAYQQSCLDGFDTDGEKKVQEQLQTGSLDNVGKITGLALDVVSGVSNVLGAFNLNLNLKPASRRLLEVDQEGYPTWFSAADRKLLGQFSSKGSQHGGQGGIIPNAVVAKDGSGQYKTVLDAINSYPKNHQGKFLIYVKAGVYDEYITVDKKKPNILLYGDGPTKTIITGRKNFNEGTKTMRTATFTTLADDFIAKSIAFENTAGPQGHQAVALRVQGDRSAFFDCAMRGYQDTLYAHAHRQYYRNCEISGTVDFIFGYATTLIQNSKIIVRRPGPNQQNIVVADGTDQKSMPTGVVMQNSEIMPEAALFNDRLTVKSYLARPWKAFSRAVFIENVIGDLIQPEGYIPWAPPNEPNTQNAYFAEFANTGPGANTQSRAKWGKGLISKTEAAKFTAEQWIQASSWLPATGIPFDAGFTKA 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3333g00024 565 FunFam Pectinesterase 246 562 - -
Gabi3333g00024 565 SUPERFAMILY Pectin lyase-like 251 560 IPR011050 -
Gabi3333g00024 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 192 IPR035513 -
Gabi3333g00024 565 Pfam Pectinesterase 251 547 IPR000070 GO:0030599|GO:0042545
Gabi3333g00024 565 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Gabi3333g00024 565 Gene3D - 247 562 IPR012334 -
Gabi3333g00024 565 SMART PMEI_2 34 188 IPR006501 GO:0004857
Gabi3333g00024 565 PANTHER PECTINESTERASE 11 552 - -
Gabi3333g00024 565 Pfam Plant invertase/pectin methylesterase inhibitor 38 186 IPR006501 GO:0004857
Gabi3333g00024 565 NCBIfam pectinesterase inhibitor domain 34 186 IPR006501 GO:0004857
Gabi3333g00024 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 190 IPR035513 -
Gabi3333g00024 565 FunFam Pectinesterase 35 193 - -
Gabi3333g00024 565 CDD PMEI-like_3 41 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3333g00024 Gabi-Chr3333 294413 296935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3333g00024 3 562 Carbohydrate Esterase AT3G05610 37.411 7.08e-129 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3333g00024 K01051 - gmx:100808559 866.685