Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3333g00013 ATGCCAGAAAACCGGCAAGTTCTGAGGAATGCTGCTTCTAATCCATCTGGTGATAACATTGAAGAAGCTATTCGGCGTTTGAAAATCAATGACAATCGGGATCGAGATGCTGCAGCTCAATCTGCACCATATCCAGATCGACCTGGTGAACCTGATTGCTTATATTATTTGAGGACCGGAATGTGTGGTTATGGGAGTAACTGTCGCTATAATCACCCTGCTCATGTTTCACTTGATACTCATTATGGTGAAGAGCTCCCTGAAAGAGTTGGGCAACCTGATTGCGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGACCAACGTGTAAATATCATCATCCAAAGGACAGGCGGGGTGCCGCTCCCGTGTCATTCAATGCTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACCTGAGAACTGGGTCTTGTAAGTTTGGAGTTGCATGCAAGTTTCATCATCCACAGCATGCTTCCCTTGGAGCTTACCCTGTGGCTGGATCTCCTACCTCAACAATTATTCCTGGATCAGGTTCACCATATTTTGGTGGGTTTCCTGCATGGTCAGTACCAAGAATGTCATATTTATCTGGGCAGGGCCTTCAATCTTATGTGCCTCCTTTTCTATCTTCTTCACAAGGCATTATACCTGCACAGAGCTGGAACAACTACATGGGAAGTATGAGCCCTACAATACCTACTGGTTTTCTTGGATCTAATCTTGTTTACGACTACATGAATCTGGGTGAGTCATTTTCTGGGGGGCAGGCAATAAGTTCAACTCTCCCTGATAGGCCTGATCAACCAGAATGTAGATACTTCATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCATCCAAAAGAAAGAATTTCCCAATCATTAGTAAATCCACTTGGCCTTCCTGTGAGACCTGGGCATGCTATATGCTCTTATTATAGAATCTATGGAATGTGCAAGTTTGGTCCAACATGCAAATTTGATCATCCAGTTTTGGCTATCCCTCAGAACTATGGCCTGACCTCGCCTACTCTATCTGTTGTTGACACATCTCTCATTGGTAATCCAAGAGTGTTGTCAACTGTCCAACCATCCGAGACATCTCCATCTAAATTATCAGGTGCAAAGCTTCAGAATTCTGATACAAAAGCTACAAAAGCTGCTACTGAAGAGTCATCCAAAGAAGCTGATACTACATCAAATACCTTACCAGCCTCCTCAGAGTCTTTACATGACTAA 1266 0.4368 MPENRQVLRNAASNPSGDNIEEAIRRLKINDNRDRDAAAQSAPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHPAHVSLDTHYGEELPERVGQPDCEYFLKTGTCKYGPTCKYHHPKDRRGAAPVSFNALGLPMRQEEKSCPYYLRTGSCKFGVACKFHHPQHASLGAYPVAGSPTSTIIPGSGSPYFGGFPAWSVPRMSYLSGQGLQSYVPPFLSSSQGIIPAQSWNNYMGSMSPTIPTGFLGSNLVYDYMNLGESFSGGQAISSTLPDRPDQPECRYFMSTGTCKYGSDCKFHHPKERISQSLVNPLGLPVRPGHAICSYYRIYGMCKFGPTCKFDHPVLAIPQNYGLTSPTLSVVDTSLIGNPRVLSTVQPSETSPSKLSGAKLQNSDTKATKAATEESSKEADTTSNTLPASSESLHD 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3333g00013 421 MobiDBLite consensus disorder prediction 369 421 - -
Gabi3333g00013 421 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Gabi3333g00013 421 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3333g00013 421 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Gabi3333g00013 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Gabi3333g00013 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 339 IPR000571 GO:0046872
Gabi3333g00013 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 297 IPR000571 GO:0046872
Gabi3333g00013 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Gabi3333g00013 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Gabi3333g00013 421 PANTHER PROTEIN PHOSPHATASE RELATED 33 378 - -
Gabi3333g00013 421 Gene3D - 125 168 - -
Gabi3333g00013 421 MobiDBLite consensus disorder prediction 403 421 - -
Gabi3333g00013 421 SUPERFAMILY CCCH zinc finger 274 299 IPR036855 GO:0046872
Gabi3333g00013 421 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Gabi3333g00013 421 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Gabi3333g00013 421 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Gabi3333g00013 421 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Gabi3333g00013 421 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Gabi3333g00013 421 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Gabi3333g00013 421 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Gabi3333g00013 421 Gene3D - 267 348 - -
Gabi3333g00013 421 Gene3D - 45 124 - -
Gabi3333g00013 421 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Gabi3333g00013 421 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Gabi3333g00013 421 MobiDBLite consensus disorder prediction 369 395 - -
Gabi3333g00013 421 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Gabi3333g00013 421 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Gabi3333g00013 421 SUPERFAMILY CCCH zinc finger 311 339 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3333g00013 Gabi-Chr3333 139451 143982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3333g00013 1 399 C3H Transcription Factor Family AT1G04990 47.585 1.97e-121 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi3333g00013 zf-CCCH 5.9e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3333g00013 - - gmx:100812856 729.554