Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3333g00012 ATGCGCCGAGGCAGAGCCGCAGATCCAACGCCACCACCACCGCCACCACCAACCGCCGAAAACCCCGTCAAGGAAACGCGATTCCGCGGCGTTAGAAAGCGTCCATGGGGCCGATTCGCCGCGGAGATCAGAGATCCGTGGAAGAAGGCTCGCGTTTGGCTCGGCACATTCGACTCCGCCGAGGACGCCGCCAGAGCCTACGACGCCGCCGCCCGCTCCTTCCGCGGTCCCAAAGCCAAGACCAACTTTCCCTTCGCTAACCCTGAAATCGATCAGATTCCCCTCTTTCATCATCACGATTTCCAAGACGACCACGTGAACCGGTTCTCAAAGTTCGACCCGGTTCACGTGAACCGCCCCACCTCCAGCGGGATGAGCAGCACCGTCGAGTCCTTCAGCGGTCCTAGGGTTCCGGTTCCGTCCTCCTCCACCACCGTCCCCAGGGTCCGTCCTCGCAGACCCGTCAACCCCGTTCCCGTCGACGATTGCCACAGCGATTGCGATTCTTCCTCCTCCGTCATCGACGATGAGGATTGCGTGCTCACCTCTTCGTTCCGGAAAACCCTACCTTTCGATCTGAACCTTCCACCGGCGCCGCCGGCCGATGACGACGCCGATTTCACCGCCGACGAGCTCCTAGCCACCGCCTTGTGTCTCTGA 660 0.6197 MRRGRAADPTPPPPPPPTAENPVKETRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPFANPEIDQIPLFHHHDFQDDHVNRFSKFDPVHVNRPTSSGMSSTVESFSGPRVPVPSSSTTVPRVRPRRPVNPVPVDDCHSDCDSSSSVIDDEDCVLTSSFRKTLPFDLNLPPAPPADDDADFTADELLATALCL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3333g00012 219 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Gabi3333g00012 219 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Gabi3333g00012 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 180 - -
Gabi3333g00012 219 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Gabi3333g00012 219 FunFam Ethylene-responsive transcription factor 2 26 85 - -
Gabi3333g00012 219 MobiDBLite consensus disorder prediction 120 162 - -
Gabi3333g00012 219 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Gabi3333g00012 219 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Gabi3333g00012 219 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Gabi3333g00012 219 MobiDBLite consensus disorder prediction 7 21 - -
Gabi3333g00012 219 MobiDBLite consensus disorder prediction 1 31 - -
Gabi3333g00012 219 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Gabi3333g00012 219 MobiDBLite consensus disorder prediction 120 149 - -
Gabi3333g00012 219 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3333g00012 Gabi-Chr3333 132741 134092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3333g00012 1 219 AP2-EREBP Transcription Factor Family AT1G50640 49.372 6.76e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi3333g00012 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3333g00012 K09286 - qsa:O6P43_014526 208.764