Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3333g00011 ATGGAAAATTCAGACTACGACGAGCCCGACAAGAAGAGGCCTCATCTCATTTCTGTTTCTTCCCGAATGCCCCGAAACTCAACCAATGCTTCTACCAACAACAAAACCGCTGATGAAGGAGTCTTACAGTTCCAGAATCAGCAGCTTGTTCAACAGATAGACATCCAAAAACATGCTTTGCATGATCTTGAAGAAAAAATTAGAGAATTAAAAGAAAGGCAAAACTCTTATGATGATTTGTTGATTGCATTGAATCAACTCTGGATTCAGCTGGTTGATGATATGGTTCTTCTTGGGATACGAACTGGGAGAGGCAAAGATGCATTGCAAACTTTGACTTACCTTGATAATCCTCAAGGTTCACTTCCTTCGTGTGCCGCGGAGGATATATTTTTATGTAGATTAATCCAGAAAGAATCTATTCAAGTAAGTAATAATGATGAGATCATTAATTACGTTGAGGAAGCCCTTGCTTTTCGTCGGTCATCTACATGGGAGTTGTTAAAACTCCTTCAAGATACCATTGTTGATCAGATGGAAAGAACTAACAGTATTGCCCAGATTTTACATGGAGATTTATCTTCAGAAGATGCTATTATCCAAATGTCTAACGTTGATGATATGACGAAAGAGGAGGCAAATAGTTTACGTGAAGTTATTGATGCTCTTCATGTGAAGCATAAAGAGTACACTGCTAGTATTCAAAATTATATTGGCGAGTGTTCACAAGATCAATCAGACATTAAACACCTTGGAGGTGAACTTGATGAGATCATGGCTGAACTTGAAGAGAGTAGAAGAAAGCTAGTCAATCTGAAAATGCAAAAGGATGCAGCGATGGGGATGAATTCCCCTAGTACAGATGCAGTGAATGGAAACTTGTCTCCTGAAAAGCCTGCAGACAGGACCATGGGTTTGCGTGAGTTGAAGGATTCAATAGAGGAAGCAAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCACAAGAAGACAATCAAACCTTGACAAACCAATTCCAAGATCTTCAGAATGAACTGAATGATGATAAGTATGTGCGCTCTTCCCGAATATACTCTTTGGCAAATGATCAACTTCAACATTGGATTGCTGAATTGGACCGATATAAAACATTGGCAGAATCCCTGCAGGCTGGCAGTGTTCATGTCACAAAATGGGAGAAGGAACTGAATTTGAAATTGGAATCTACCGATTCTGCAAGGCATATCCTTGACAATTCTAAACATAGGATAGATGAGCTAGAGCTTCAGTTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTAAGATGGAAGAGGCTGTACAGGATACTGGGAGAAAAGATATCAAATCTGAGTTTCATGTGATGGCTTCAGCTTTATCTAAAGAAATGGGGATGATGGAAGCTCAATTGAAGCGATGGAAGGATGCAGCTCATGAGGCTGTATTGTTACGTGAGAAAGCACATTCACTAAGAGCACTGTTAAGTGGGAAGACAAGCAAACTTAAGAGCCTTGCAAACAAATGTGCAGAACAGGTTTTGGAAATCAAGTCTTTAAAAACATCGATTGAAAAGTTACAGAAGGAGAAACTGGAGTTAGAATTTGTTCTGGATATGCATGGCCAGGAGAATTATGAGAAAAGATATTTGGCTGAAGTTAGAGAATCTGAAAGTAAAGCTCACTCTCAAGCTGAAATGCTGAAAAATGCTTTAGATGAGCATAGTCTAGAGTTGAGAGTAAAAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCTGCAGAAGCTGAAATAGAGGAGTTAAGGGTCAAGCTGGATGCATCCGACAGAGATATTTTGGAGCTGACTGAGGCTATTAAAGTTAAAGATGCTGAGGCAGAGGCATATATATCTGAAATTGAGACAATTGGTCAAGCATACGAAGATATGCAGACACAGAACCAACATCTGTTGCAGCAGGTGACCGAGAGGGATGATTATAATATTAAGCTTGTATCAGAAAGCGTGAAGACAAAACAGGCACATAGCACTTTACTGTCTGAGAAGCAGGCCTTAGCAAAGCAGCTTCAGCAAATTAATGCTTCAATAGAAAATTCAAAGATGAGGATTACACACAGTGAAGAGCAGATGAAAGCTCTACTATCAGAGGCCATTAAATGTACTCAAGATGAAAAACACCTTGCAGTCAACCTTGAATTTGCAAAGTGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTGGCTCAAGTCTGCTATTTCCTCTTCAGAGAAAGAATACGATCAAATTCAGAAAGATACGGAAGCTATTGAAATGGAGTTAGATAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGATCTAAGGGAATTGAACAGCAAAATTACTGAGCTGAGTTCTGAAACTGGTGAAACCGCAATACAAAAACTCGAAGAAGAAATGAGGGTTTGCAAGAACATGATCAAGTGTACTGTTTGTTCTGATCGTCCTAAGGAGGTTGTGATTGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATACAAAGAAATCTAGAGCTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGTGATGTTCGCTTTGTTAAAATATGA 2643 0.3977 MENSDYDEPDKKRPHLISVSSRMPRNSTNASTNNKTADEGVLQFQNQQLVQQIDIQKHALHDLEEKIRELKERQNSYDDLLIALNQLWIQLVDDMVLLGIRTGRGKDALQTLTYLDNPQGSLPSCAAEDIFLCRLIQKESIQVSNNDEIINYVEEALAFRRSSTWELLKLLQDTIVDQMERTNSIAQILHGDLSSEDAIIQMSNVDDMTKEEANSLREVIDALHVKHKEYTASIQNYIGECSQDQSDIKHLGGELDEIMAELEESRRKLVNLKMQKDAAMGMNSPSTDAVNGNLSPEKPADRTMGLRELKDSIEEAKIVDADRLSELQDAQEDNQTLTNQFQDLQNELNDDKYVRSSRIYSLANDQLQHWIAELDRYKTLAESLQAGSVHVTKWEKELNLKLESTDSARHILDNSKHRIDELELQLQKCIIEKNDLEIKMEEAVQDTGRKDIKSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVLLREKAHSLRALLSGKTSKLKSLANKCAEQVLEIKSLKTSIEKLQKEKLELEFVLDMHGQENYEKRYLAEVRESESKAHSQAEMLKNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEELRVKLDASDRDILELTEAIKVKDAEAEAYISEIETIGQAYEDMQTQNQHLLQQVTERDDYNIKLVSESVKTKQAHSTLLSEKQALAKQLQQINASIENSKMRITHSEEQMKALLSEAIKCTQDEKHLAVNLEFAKWELADAEKELKWLKSAISSSEKEYDQIQKDTEAIEMELDSERSSRKKLEEDLRELNSKITELSSETGETAIQKLEEEMRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3333g00011 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 879 IPR013083 -
Gabi3333g00011 880 MobiDBLite consensus disorder prediction 1 17 - -
Gabi3333g00011 880 Coils Coil 737 806 - -
Gabi3333g00011 880 Coils Coil 685 722 - -
Gabi3333g00011 880 Coils Coil 583 624 - -
Gabi3333g00011 880 Coils Coil 327 347 - -
Gabi3333g00011 880 MobiDBLite consensus disorder prediction 20 35 - -
Gabi3333g00011 880 MobiDBLite consensus disorder prediction 280 301 - -
Gabi3333g00011 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Gabi3333g00011 880 Coils Coil 46 80 - -
Gabi3333g00011 880 Coils Coil 412 446 - -
Gabi3333g00011 880 PANTHER RING FINGER PROTEIN-RELATED 8 880 IPR013956 GO:0004842|GO:0010390
Gabi3333g00011 880 Coils Coil 512 539 - -
Gabi3333g00011 880 CDD RING-HC_Bre1-like 820 876 - -
Gabi3333g00011 880 SUPERFAMILY RING/U-box 827 871 - -
Gabi3333g00011 880 SMART ring_2 828 866 IPR001841 -
Gabi3333g00011 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Gabi3333g00011 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Gabi3333g00011 880 Coils Coil 248 275 - -
Gabi3333g00011 880 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3333g00011 Gabi-Chr3333 111003 123111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3333g00011 802 875 RAD5 or RAD16-like Gene Family AT5G05130 26.506 3.68e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3333g00011 K10696 - gmx:100796610 1432.54