Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3333g00006 ATGATTTCTCAACTGAATCGAAATAGCTTCTTCCTTTTCCACCCTGCCGTGCATCGAAAACCTGTCGCAACACGAAACCCATTTTCTGTATCTCTCAAAGTTGGAAACTTTCGCGGTTCCGAGGCTACCCGTGTTCCCAGTTTTTCTCCAGTGAGTTCTATTCGGTCTAGGCGACGGGTGTCTCGGGTTGTGAGGACTGAAGCGCAGAATGTTCTGTTTGATTACCTGCATTCAACTCGGGGTTACACCTTCTTGGACGCTGAGTTCGTGAGCAAGAACTCGCCGCGTTTCGTTGAAGGCTTGGCGTCAAAGATTGATGGAGAGAATGATGATGACGATGTTGCTCGATCGTTAAGGAAGTTCTTGAGGTACAATCCCATCAATGAGTTTGAACCATTTTTTGAGAGTTTGGGGATTAGCCCTTCTGAGTTGCCTTTGGTTCTACCTCCTGGGATGATTTTTTTGGCTGATGATTGTGTGTTGCTTGAAAATTTTCATGCTTTGTGTAATTATGGGATCCCGAGAAATAGAATGGGGAAAATTTATAAGGAAGCAAAAGAGATTTTTGGGTATGCTAGTGGATTGTTGTTGTCAAAATTTCGAGCTTACGAAAATTTGGGTTTGAGTAGATCAACCGTCATCAAGCTTGCTGTTTGTTGCCCTTCACTTTTGGTTGGTGATATCAATTGTGAATTTGTTAGCGTACTTGATTGGTTGAAAAAACTTGGGATTGAAAATGATTGGATTGTGAATTACTTGTCTTGTTCAAGAACATATAATTGGAAGAGAATGCTGGATGCCGTGCAATTTCTTCATAAAGTGGGCTATTCTGAGGAACAGATGCACAATTTGTTTAAGGAAAATCCTAAAATATTGTTGGAAGGTTTTGAGAAGGAGCAGTACTTATTTTTTGGTCGATCACTTAAGTTGGGTGTCAAGATGAACGTGATTTATTCTTATTTTATTGAGTATCCCCATATCTTGTCAAGTAAGTGTGCAAAAAATCTGTTGGGAGTGGTTGATTTTTTGTATGTTATTGGAATGGGAACAGATGACATTACACACATTTTGTCTAAGCACATGCATCTCCTGAGCTCACATCCCTTGAAAGGTCCTAAAACTGTTTGTAAGGAGTTAAAAGTTGAAAAAGCTAATTTATGTGAAATCATAAAGGATGATCCATTGAAGCTAATTAGTTTGGGTTCAAAACTGGAACAGAAGAGCGCTGAACGGTTATCCGGTCATGACCCACGTAAATATTTGGAAAAAACAACTTTCTTGCTGAAACTGGGTTATACAGAGAACTCTGAGGAGATGGCAAAAGCATTAAAAATGTTCCGAGGGAGAGGTGATCAATTACAAGAGAGGTTTGATTGCCTGGTAGAAGCTGGTTTGGACTATAACAGTGTGATCGAAATGGTAAAACGAACTCCTATGATTTTAAACCAGAAGAGAATTGTAATTGGAAAGAAGATTGATTTCTTAAGGAATGTTTTAGGTTATCCATTAGAATGTCTTGTGGGATACCCATCATACTTTTGCCATGATTTGGAGAAAATTAGTGAAAGATTTTCAATGTATGCATGGCTGAAGGAGAGGAATGCAGTAAATCCTACGGTTACCTTGAGCACCATAGTTTCAGCCAATGATAAACGGTTTGTAAAATACTTTGTGAATGTGCATCCTGAAGGTCCAACTATCTGGAAAGGTCTTAAAAGGTTATCAAATAAAAATAAGAACTAA 1743 0.3896 MISQLNRNSFFLFHPAVHRKPVATRNPFSVSLKVGNFRGSEATRVPSFSPVSSIRSRRRVSRVVRTEAQNVLFDYLHSTRGYTFLDAEFVSKNSPRFVEGLASKIDGENDDDDVARSLRKFLRYNPINEFEPFFESLGISPSELPLVLPPGMIFLADDCVLLENFHALCNYGIPRNRMGKIYKEAKEIFGYASGLLLSKFRAYENLGLSRSTVIKLAVCCPSLLVGDINCEFVSVLDWLKKLGIENDWIVNYLSCSRTYNWKRMLDAVQFLHKVGYSEEQMHNLFKENPKILLEGFEKEQYLFFGRSLKLGVKMNVIYSYFIEYPHILSSKCAKNLLGVVDFLYVIGMGTDDITHILSKHMHLLSSHPLKGPKTVCKELKVEKANLCEIIKDDPLKLISLGSKLEQKSAERLSGHDPRKYLEKTTFLLKLGYTENSEEMAKALKMFRGRGDQLQERFDCLVEAGLDYNSVIEMVKRTPMILNQKRIVIGKKIDFLRNVLGYPLECLVGYPSYFCHDLEKISERFSMYAWLKERNAVNPTVTLSTIVSANDKRFVKYFVNVHPEGPTIWKGLKRLSNKNKN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3333g00006 580 FunFam Transcription termination factor MTEF18, mitochondrial 302 571 - -
Gabi3333g00006 580 Pfam mTERF 268 496 IPR003690 GO:0003690|GO:0006355
Gabi3333g00006 580 Pfam mTERF 444 553 IPR003690 GO:0003690|GO:0006355
Gabi3333g00006 580 FunFam mTERF family protein 107 258 - -
Gabi3333g00006 580 PANTHER CGI-12 PROTEIN-RELATED 264 561 IPR003690 GO:0003690|GO:0006355
Gabi3333g00006 580 SMART mt_12 503 536 IPR003690 GO:0003690|GO:0006355
Gabi3333g00006 580 SMART mt_12 319 349 IPR003690 GO:0003690|GO:0006355
Gabi3333g00006 580 SMART mt_12 179 209 IPR003690 GO:0003690|GO:0006355
Gabi3333g00006 580 SMART mt_12 471 502 IPR003690 GO:0003690|GO:0006355
Gabi3333g00006 580 SMART mt_12 214 245 IPR003690 GO:0003690|GO:0006355
Gabi3333g00006 580 SMART mt_12 436 466 IPR003690 GO:0003690|GO:0006355
Gabi3333g00006 580 Gene3D Transcription termination factor 3, mitochondrial 124 299 IPR038538 -
Gabi3333g00006 580 Gene3D Transcription termination factor 3, mitochondrial 300 568 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3333g00006 Gabi-Chr3333 80585 82366 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi3333g00006 mTERF 2.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3333g00006 - - gmx:100803162 865.914