Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3332g00001 ATGTTTTCAAAATATGATTTTCTGAAGGATGTCAATCCTGCCAAGGAGGACTGGAGGATTAAGGTGAAGGTGGTTCGGGCTTGGAAAGTTCCGAACTTTCAATGTAGAGATTTTGACGACAATGTTGAAATGGTTTTATTGGATGAACAGGGTGGTAGGATCCACGCCACTGTCAAAGGTTCTTTGCCAGTGCGGAAGAAAATCCATGAAGGAGAGCCAACCAAGCATCAGTATCGTTTGTCCTTCAACTTGAGGACTGATGATAAATCGATTGTTGATTGTGATCTTTCTTGGAGTCAATTTGATTTTGTTGATTATAACATCATTGAGAAAGAATCATCTGACTCTCCTTATTTAGTGGACGTCATTGGTTTAATTTCAGGAATTGGGGAAGTTTGCGAACGTGTAGTTTCTGGTAGGAAAACGAAAATGGTTGTGTTGGAGCTTGACAACTTGAGGGGTCACAAGCTGGAATGCACTTTTTGGGAGCATTATGTGGATGAGGTGCAATCTTTTTTGGCAAACAACGACACTCCCCATAACGTCTTAATAGTTCAGCTGGGAAGGATCAAATGTTTTAGGGGTAAGGTCGGTTTAACCAATACAAAATACACAACAAAGATTGTCATTGATTCAAAGGTGCCAGAGATTATTGAGTTCAAAAAACGTCTTTCAACTGATGGTGTGGAAAGTAGTATGAGGTTGACTCAGTCCTCATATTCGTTCGAAAATGATTTTCTTAAGGAGACTGAAAAGAAGTCTATCAGTGATGTTAAGCTTTGTGGTGAGGTTATGACGTGCATCACGTATGGGACTATACAATCTATTGAGAGCAAATACAACTGGTGGTACAAGTCTTGCAAGAAATGTCCATTTTCTGTTTGTGAGGATTTTGAAAAGTGGTACTGTAAGAATTGCCAAAAATATTGGGATGATTATTATCCAAGATTTAGTGTTCAGGTTAAAGTTGTGGATAACACTGATTCTGCATCATTTCTTCTGTTTGATCAAGACTGTGTTACATTGTTGGGAATATCTGCTGGTGAATCGCGCGAGCGACATTTTAAGAGGGGTGCGGATTTGGATCAATTTCCAGAAGAACTAAATGTTTTGAATGAGAAGTCAATGTTGTTTAAGATAAATGTGAAGCAGAAAGATCTGAACTCAATGTTCATTAAGTCTCTGATTGATCCAAATGAGGAAACAAATTTTGATACTGCTCGTGAAAACAAAATTGTATCGTCGGAACCTGAAAAGGCTGCGGATGTTGAGAGTCAGACCTGTGATAGTGTTGACGTTGGTGATGTTTCTCTGACTATGTTGACACCAATGATTAATTCTCATTATTCTATTGCTGGAGAATTTAATTTTTCAGCTGTCCGAACTGCGAAAGAAATAAAGCTTGAAAAGGAGTTACGTATTTTCTGA 1428 0.3845 MFSKYDFLKDVNPAKEDWRIKVKVVRAWKVPNFQCRDFDDNVEMVLLDEQGGRIHATVKGSLPVRKKIHEGEPTKHQYRLSFNLRTDDKSIVDCDLSWSQFDFVDYNIIEKESSDSPYLVDVIGLISGIGEVCERVVSGRKTKMVVLELDNLRGHKLECTFWEHYVDEVQSFLANNDTPHNVLIVQLGRIKCFRGKVGLTNTKYTTKIVIDSKVPEIIEFKKRLSTDGVESSMRLTQSSYSFENDFLKETEKKSISDVKLCGEVMTCITYGTIQSIESKYNWWYKSCKKCPFSVCEDFEKWYCKNCQKYWDDYYPRFSVQVKVVDNTDSASFLLFDQDCVTLLGISAGESRERHFKRGADLDQFPEELNVLNEKSMLFKINVKQKDLNSMFIKSLIDPNEETNFDTARENKIVSSEPEKAADVESQTCDSVDVGDVSLTMLTPMINSHYSIAGEFNFSAVRTAKEIKLEKELRIF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3332g00001 475 Gene3D - 5 89 IPR012340 -
Gabi3332g00001 475 CDD RPA1_DBD_B_like 121 224 - -
Gabi3332g00001 475 Gene3D - 95 233 IPR012340 -
Gabi3332g00001 475 Gene3D - 234 407 IPR012340 -
Gabi3332g00001 475 CDD RPA1_DBD_C 267 390 IPR047192 -
Gabi3332g00001 475 Pfam Replication factor-A C terminal domain 269 388 IPR013955 -
Gabi3332g00001 475 SUPERFAMILY Nucleic acid-binding proteins 101 229 IPR012340 -
Gabi3332g00001 475 SUPERFAMILY Nucleic acid-binding proteins 251 391 IPR012340 -
Gabi3332g00001 475 SUPERFAMILY Nucleic acid-binding proteins 6 85 IPR012340 -
Gabi3332g00001 475 PANTHER OS03G0429900 PROTEIN 8 423 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3332g00001 Gabi-Chr3332 14100 16561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3332g00001 1 389 Core DNA Replication Machinery Family AT5G08020 22.326 9.54e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3332g00001 - - adu:107490971 257.299