LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3331g00044	ATGGATGTAGTTTTTAGCTTACCTCAGTCAAAAATGTTATTGGATGGTTTTGATTCTTGCATTGTGTTTGGAGGGAGAGGTTTTGGTTGTGCTTTTCTTGGAAACTCTGGGACTATTTTGAAAGCTCGTTTTAGTGGGATGAACAAGATTGGTAGTATGAGAAATGCAGGAGTGGTTTGTGTAGGAGAGTTCAAGGTTTCAAATGTGAAGAGGAGTTTGTCTTGTAAGAATAATAGCCTTTTTAGGAAGAATAGGACAATTTGGTCAAAGTGTCAGGGTAATGATTCCTTAGCATATGTCAATGGCAATGGCCGGAATGTTGGTAATGTGAAAGGTACGGATGATGCTGAATTGAGTAAACCATTAGCACGAGAAGAAGAAGAAGGGCAAGGAGGGAGAAAAGAAGTTGGGGGTGAAGTAGAAGTAGAGGTACGAAGTGTGGATGAATTGAAGGAACAGTTGCAAAAAGCCTTGAAAGAACTAGAAGATGCTAGAGTAAATAGTACCATGTTTGAGGAAAAGGTTAAAAAGATATCAGAGATTGCGATTTTGTTGCAGGATGAAGCAACAAGTGCTTGGAATGATGTTAATTCTACCCTTGATTTCGTCCAAGAAATTGTGAGTGAGGAATCTGTTGCCAAAGAAGTTGTTCAAAAAGCAACAATGGCTCTTTCTTTAGCTGAGGCAAGGCTTCAAGTAGCCGTCGAATCTTTGGAGGTTGCAAAAGGAGTTTACAATTCTCCGCAAGGTTCTAACAAGAGTAAAGGTGATAAAGATATAATGCAAGAGGAAAAAACACTTTTGTTTGCTCAGGAAGATATCAGGGAATGTCAGATTAATTTGACCAATTGTGAGGCTGAGCTGAGGTGCTTACAAAGTAGAAAGGAGGATTTGCAGAATGAAGTGAAAAAGTTGCATGAAATTGCAGAAAAGGCACAGCTGAATGCAGTGAAAGCGGAGGGGGATGTCACAAACATAATGCTTTTAGCAGAGCAAGCTGTTGCCTTTGAGCTTGAAGCTGCACAGCGTGTGAATGATGCAGAGATTGTATTACTGAGAGCAGACAAGTCTGTCTCTAGTTTTGATGCTGATACCATAGACACTTTACAAGTGCAAGATGTTGTGTCTGTTCCTGAGGAGGAGAAAATGGTTCAACCTTTTTCTGGTGATGATGCTGTTGAAAGAGAGAAAGATTTCTTAACTGATGATGAATCTTTGCTTGCCATGAGATCACCAGAGACACTATCTGATAAAACCAGCCAAATTTTGGAAGACATAACACAGTCTGATTATCTGAGTGATCATGAGAATGGACAATTAAGCTTAGACTCTTCTAAGAAAGCTGATGTCGAAGTAGAGAAGGCAAAGAATGTCGTTCAAACCAAAAAACAGGAAACACAGAAAGATTTGACCAGAGATAATTCACCATTTGCTCCAAAGGCATTGTTGAAGAAGTCTTCCCGGTTTTTTCCTGCATCATTCTTTTCTTTTAATGTGGATGAGGCTGATTATACACCGGCATCTGTTTTCCATGGTCTTGTGGAGTCTGCACAGAAGCAGTTACCCAAGCTGGTTGTTGGGTTATTGTTAATTGGAGCGGGGGTTACATTCTACGCTAATAGAGCAGAGAGGAGTGCTCAGCTGCTTCAGCAGCCAGAAGTCATTGCAACAACTGTTGAAGAAGTTTCCTCAAGTGCAAAGCCTCTGGTTAGACAACTTCAGAAACTCCCCATGAGAATTAAGAAAATTATTGCGTCATTACCTGATCAAGAGGTGAATGAGGAGGAAGCCTCACTCTTTGACATGCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATTCCTGGAGGCAGTCCTGTTCTTGGGTACTTGGCGGCTGGTATCTTGATTGGGCCTTATGGTCTCTCCATCATTCGTCATGTTCATGGGACAAAAGCAATAGCTGAATTTGGAGTTGTTTTCCTGTTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGATCTGCTCAGGTTTTGGTGACTGCTGTTGTTGTTGGCTTGGTGGCTCATTATGTTTGTGGCCAAGCTGGTCCTGCTGCTATTGTCATTGGGAATGGCCTGGCATTATCATCAACTGCTGTTGTTCTGCAGGTGTTACACGAGAGAGGTGAGAGCACATCACGGCATGGACGGGCTACATTTTCCGTTTTACTTTTTCAGGATTTGGCTGTTGTGGTCTTGCTAATACTCATACCTCTTATTTCTCCTAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCTGCAGTTGCCATCACTGCCATAATTGCTGGTGGACGACTGCTCCTTCGACCCATATATAAGCAGATTGCAGAAAATCAAAATGCAGAAATATTTTCCGCCAATACACTCTTTGTTATTCTTGGAACTAGCCTTCTCACAGCCAGGGCAGGACTTTCCATGGCATTGGGAGCATTTTTGGCAGGTTTACTACTGGCAGAAACTGAATTTTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTATTCTTTATGACGGTTGGAATGTCTATTGATCCAAAGCTTCTTGTTTCAAACTTTCCGGTCATTGCAGGGACACTGGGACTCTTAATATGTGGCAAGACTCTCTTGGTTTCTTTGATTGGCAGAATTTTTGGTATTTCACTCATTTCTGCCGTAAGAGTTGGTCTTCTTCTTGCTCCTGGGGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAAATGTCCTCTTTGCTGTTTCTTGTTGTGGGAATTTCAATGGCCCTCACACCATGGCTAGCTGAAGGAGGCCAGCTGATTGCTTCCCGTTTTGAGCTGCATGATGTTCGAAATTTATTACCTGTAGAAAGTGAGACAGATGATCTGCAAGGTCATATCATTATTTGTGGATTTGGGCGAGTTGGCCAGATTATTGCACAACTTCTTTCTGAGCGACTTATTCCTTTTGTTGCACTAGACGTGAGAAGTGATAGAGTGGCAATTGGGCGTTCCATGGATCTCCCCGTGTACTTTGGAGATGCTGGTAGTCGAGAGGTCCTACACAAGGTTGGAGCCGAAAGGGCAAGTGCTGCAGCAGTAACTCTAGATTCCCCTGGTGCAAATTATAGAACAGTTTGGGCTCTGAGCAAGCACTTTCCAAATGTGAAGACCTTTGTTCGTGCTCACGATGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACTGCTGTTGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCAGCTGCAGTGCTTGCTCAGGCTAAACTTCCTGCATCAGAGATTGCAGCAGCTATAAATGAATTCAGATCCCGCCATCTATCTGAGCTCACAGAACTGTGTGAAACGAGTGGAAGTTCTCTTGGATATGGATATAACAGAATTATGAGTAAACCCAAATCTCAATCCCCAGATTCATTAGATGAGACCCAATTCTCTGATGGGACACTGGCGGCATGA	3612	0.4241	MDVVFSLPQSKMLLDGFDSCIVFGGRGFGCAFLGNSGTILKARFSGMNKIGSMRNAGVVCVGEFKVSNVKRSLSCKNNSLFRKNRTIWSKCQGNDSLAYVNGNGRNVGNVKGTDDAELSKPLAREEEEGQGGRKEVGGEVEVEVRSVDELKEQLQKALKELEDARVNSTMFEEKVKKISEIAILLQDEATSAWNDVNSTLDFVQEIVSEESVAKEVVQKATMALSLAEARLQVAVESLEVAKGVYNSPQGSNKSKGDKDIMQEEKTLLFAQEDIRECQINLTNCEAELRCLQSRKEDLQNEVKKLHEIAEKAQLNAVKAEGDVTNIMLLAEQAVAFELEAAQRVNDAEIVLLRADKSVSSFDADTIDTLQVQDVVSVPEEEKMVQPFSGDDAVEREKDFLTDDESLLAMRSPETLSDKTSQILEDITQSDYLSDHENGQLSLDSSKKADVEVEKAKNVVQTKKQETQKDLTRDNSPFAPKALLKKSSRFFPASFFSFNVDEADYTPASVFHGLVESAQKQLPKLVVGLLLIGAGVTFYANRAERSAQLLQQPEVIATTVEEVSSSAKPLVRQLQKLPMRIKKIIASLPDQEVNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHYVCGQAGPAAIVIGNGLALSSTAVVLQVLHERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLFVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPVIAGTLGLLICGKTLLVSLIGRIFGISLISAVRVGLLLAPGGEFAFVAFGEAVNQGIMSSQMSSLLFLVVGISMALTPWLAEGGQLIASRFELHDVRNLLPVESETDDLQGHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRSMDLPVYFGDAGSREVLHKVGAERASAAAVTLDSPGANYRTVWALSKHFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPASEIAAAINEFRSRHLSELTELCETSGSSLGYGYNRIMSKPKSQSPDSLDETQFSDGTLAA	1203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3331g00044	1203	Coils	Coil	140	174	-	-
	Gabi3331g00044	1203	Coils	Coil	267	315	-	-
	Gabi3331g00044	1203	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	1004	1143	IPR036291	-
	Gabi3331g00044	1203	PANTHER	K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC	182	1192	-	-
	Gabi3331g00044	1203	Gene3D	-	1005	1167	-	-
	Gabi3331g00044	1203	FunFam	K(+) efflux antiporter 2 chloroplastic	1003	1167	-	-
	Gabi3331g00044	1203	ProSiteProfiles	RCK N-terminal domain profile.	1007	1129	IPR003148	GO:0006813
	Gabi3331g00044	1203	Pfam	TrkA-N domain	1008	1121	IPR003148	GO:0006813
	Gabi3331g00044	1203	NCBIfam	monovalent cation:proton antiporter-2 (CPA2) family protein	606	886	IPR004771	GO:0006812\|GO:0008324\|GO:0016020
	Gabi3331g00044	1203	MobiDBLite	consensus disorder prediction	1179	1203	-	-
	Gabi3331g00044	1203	Gene3D	-	595	981	IPR038770	-
	Gabi3331g00044	1203	Pfam	Sodium/hydrogen exchanger family	605	975	IPR006153	GO:0006812\|GO:0015297\|GO:0016020\|GO:0055085\|GO:1902600
	Gabi3331g00044	1203	FunFam	K(+) efflux antiporter 2 chloroplastic	595	981	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3331g00044	Gabi-Chr3331	412439	425829	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3331g00044	91	1202	Inorganic Solute Cotransporters	AT4G00630	71.606	0.0	1442

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3331g00044	K03455		-	gmx:100791174	1824.29