Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3331g00043 | ATGTCATTCACAGGAACTACTGATAAATGCAAGGCATGTGATAAGACTGTTCATGTTGTTGACTTGTTAACTCTTGAAGGTATTCCTTATCATAAAGCCTGCTTCAAATGCAGTCACTGCAAGGGATATCTTTCGATGAGCACATACTCCTCAATGGATGGTGTTCTGTATTGCAAGCCACATTTTGAACAGCTTTTCAAGGAGTCTGGCAATTTCAGCAAGAACTTTCAATCTGCAAAGTCTTCTGACAAACAAAACGACCTGATGAATAGGACCCCGAGTAGGCTCTCTTCTATGTTCAGTGGAACACAAGACAAATGCGCGGTTTGCTTAAAAACAGTGTATCCGCTGGAAAAGATGACACTGGAAGGGGAATGCTACCACAAGACATGCTTTAGGTGTGCTCATGGAGGGTGCACTCTCACACATTCAAGCTATGCTGCACTTGATGGTGTCCTCTATTGCAGGGTCCATTTCCAACAACTTTTCATGGAGAAAGGGAACTATAGCCATGTACTCCAAGCTGCTGCACATAAGAGGACTGGTTCTTCTGATGCTCCTCCTGTACCAGTTGATGCTCCTGAACCAGTTGAAAAGCCATCAGAGCCACAAGCATCTGAGGAACAAACAGAAGAAACCTCTTAG | 645 | 0.4388 | MSFTGTTDKCKACDKTVHVVDLLTLEGIPYHKACFKCSHCKGYLSMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQSAKSSDKQNDLMNRTPSRLSSMFSGTQDKCAVCLKTVYPLEKMTLEGECYHKTCFRCAHGGCTLTHSSYAALDGVLYCRVHFQQLFMEKGNYSHVLQAAAHKRTGSSDAPPVPVDAPEPVEKPSEPQASEEQTEETS | 214 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3331g00043 | 214 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Gabi3331g00043 | 214 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 133 | 172 | - | - | |
| Gabi3331g00043 | 214 | MobiDBLite | consensus disorder prediction | 178 | 214 | - | - | |
| Gabi3331g00043 | 214 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Gabi3331g00043 | 214 | Gene3D | Cysteine Rich Protein | 101 | 171 | - | - | |
| Gabi3331g00043 | 214 | Gene3D | Cysteine Rich Protein | 4 | 72 | - | - | |
| Gabi3331g00043 | 214 | ProSiteProfiles | LIM domain profile. | 105 | 165 | IPR001781 | - | |
| Gabi3331g00043 | 214 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 99 | 132 | - | - | |
| Gabi3331g00043 | 214 | FunFam | LIM domain and actin-binding 1 | 101 | 171 | - | - | |
| Gabi3331g00043 | 214 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Gabi3331g00043 | 214 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Gabi3331g00043 | 214 | SMART | lim_4 | 106 | 158 | IPR001781 | - | |
| Gabi3331g00043 | 214 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Gabi3331g00043 | 214 | Pfam | LIM domain | 107 | 162 | IPR001781 | - | |
| Gabi3331g00043 | 214 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Gabi3331g00043 | 214 | PANTHER | OS06G0237300 PROTEIN | 84 | 206 | - | - | |
| Gabi3331g00043 | 214 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Gabi3331g00043 | 214 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3331g00043 | Gabi-Chr3331 | 406189 | 408101 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Gabi3331g00043 | LIM | 6.5e-09 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3331g00043 | - | K09377 | gmx:100305845 | 350.132 |