Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3331g00034 ATGGGAAGGACACCTTGTTGTGAAAAGATGGGCTTGAAGAAAGGTCCATGGACAGCTGAAGAGGATGAGGTTCTAGTCAATTATATAAAGAAGAATGGTGGTCATGGAAGCTGGCGTTCTCTTCCCAAGTTAGCAGGTCTTCTTCGATGTGGTAAGAGTTGCAGGCTAAGGTGGACGAACTACCTCAGACCTGATATTAAACGTGGCCCTTTTACTCTTGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATGCTTGGAAATAGATGGGCTGCTATAGCCTCTCAGCTACCAGGAAGAACAGACAATGAGATCAAGAATTTATGGAACACACACTTGAAGAAACGTCTAATATGCATGGGACTTGACCCCCAAACCCATGAGCCAGTGTCCTCTTCACATTATCCAATAGACAAGGCACATGCATCTATATCCACACGCCACATGGCTCAGTGGGAGAGTGCAAGACTTGAAGCAGAAGCAAGACTCTCAAGGGAGTCATCATTGTTCAACAATCCTTCCCTTTTTGCTAACAAAACTACTGATTCTGACTATTTCCTACGCATATGGAACTCTGAAGTTGGAGAATCTTTTCGTAGTGTTCACAAATCAGATGACAAAACTAAAAGCTGCCAAAGTCCCATTTCTCCAAGATCATCATCTTCCAACATGTGTGGTTCATTTTTTGCCATTTCAAAAGATTTGGCTTCCAACACAGTTGGATCCTCAACCCCAGCAAGTGTGATTCATGGCTCTGATTCATCAAGCTCTAATGACCTAGAAGACTCATCTGACACTGCATTACAGCTCTTGTTAGATTTTCCTATGAACAATGACATGAGCTTCTTAGAATAA 855 0.4257 MGRTPCCEKMGLKKGPWTAEEDEVLVNYIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTLEEEKLVIQLHGMLGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHEPVSSSHYPIDKAHASISTRHMAQWESARLEAEARLSRESSLFNNPSLFANKTTDSDYFLRIWNSEVGESFRSVHKSDDKTKSCQSPISPRSSSSNMCGSFFAISKDLASNTVGSSTPASVIHGSDSSSSNDLEDSSDTALQLLLDFPMNNDMSFLE 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3331g00034 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gabi3331g00034 284 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gabi3331g00034 284 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi3331g00034 284 MobiDBLite consensus disorder prediction 201 222 - -
Gabi3331g00034 284 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gabi3331g00034 284 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gabi3331g00034 284 SMART sant 13 64 IPR001005 -
Gabi3331g00034 284 SMART sant 67 115 IPR001005 -
Gabi3331g00034 284 CDD SANT 16 62 IPR001005 -
Gabi3331g00034 284 Gene3D - 11 68 - -
Gabi3331g00034 284 FunFam MYB transcription factor 70 117 - -
Gabi3331g00034 284 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Gabi3331g00034 284 MobiDBLite consensus disorder prediction 242 262 - -
Gabi3331g00034 284 FunFam Myb transcription factor 11 68 - -
Gabi3331g00034 284 CDD SANT 70 113 IPR001005 -
Gabi3331g00034 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gabi3331g00034 284 Gene3D - 70 117 - -
Gabi3331g00034 284 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3331g00034 Gabi-Chr3331 354363 356834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3331g00034 1 284 MYB Transcription Factor Family AT3G61250 68.858 4.27e-132 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3331g00034 Myb_DNA-binding 6.3e-13 CL0123