LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3331g00032	ATGAACAACAATAGAGCGAGGTATCCACCTGGGATTGGGATTGGACGAGGAGGTTTGAATCCGAACCCGAATCCGAATCCGAACCCGAACCATCCGTTTCACCCTAGGCCCTCTTACCAGCACCACCAGCAACAGCACCACCAGCAACAGCACCAGCAACAGCACCAGCAACAGCAGCAGCAACAACAACAACAGCAACACTATGTGCAGCGGCATTTGGTGCAGCAACAGCAACAGTGGTTGAGAAGGGCGCAGTTGGGTGTTGCTGACACCAACGTTGTTGACGAGGTTGAGAAGACTGTGCAATCCGAAGCCGTTGACACGAGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCAGCACCCGATACACGCTATAGGACAGAGGATGTTACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAGGATAGTAATGTTATTCAAGTTGTTATACTGGTCCCAACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATAATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCTAAGAAGGGTGTTTGTATTCTGAAAGATTGTTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTGTCTCCTGAGTTCCAACCTTCCATACAGCAGCTGATTCATTTTCTTCCTACAAATCGTCAAATCCTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGGTATCTTCATAAACCATATGTCATCAACCTCATGGATGAGCTAACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCCTAAATACTCTATTTTCCAAGCTGCAAATAAACCAGTCGATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTACTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCATCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCATGCCGAAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACTTATTTGCACAGGGTTGGTCGTTCTGGGAGGTTTGGACACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCACCATTCATTGATCAGGCAATTTATTGCCGGTGA	1536	0.4154	MNNNRARYPPGIGIGRGGLNPNPNPNPNPNHPFHPRPSYQHHQQQHHQQQHQQQHQQQQQQQQQQQHYVQRHLVQQQQQWLRRAQLGVADTNVVDEVEKTVQSEAVDTSSQDWKARLKIPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDSNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIQQLIHFLPTNRQILMFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR	511

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3331g00032	511	CDD	DEADc_DDX6	139	339	-	-
	Gabi3331g00032	511	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	168	338	IPR014001	-
	Gabi3331g00032	511	FunFam	ATP-dependent RNA helicase DDX6	342	511	-	-
	Gabi3331g00032	511	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	54	510	-	-
	Gabi3331g00032	511	FunFam	ATP-dependent RNA helicase DDX6	118	341	-	-
	Gabi3331g00032	511	Pfam	DEAD/DEAH box helicase	162	326	IPR011545	GO:0003676\|GO:0005524
	Gabi3331g00032	511	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	348	508	IPR001650	-
	Gabi3331g00032	511	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	207	491	IPR027417	-
	Gabi3331g00032	511	MobiDBLite	consensus disorder prediction	37	65	-	-
	Gabi3331g00032	511	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	284	292	IPR000629	-
	Gabi3331g00032	511	Gene3D	-	342	510	IPR027417	-
	Gabi3331g00032	511	MobiDBLite	consensus disorder prediction	1	65	-	-
	Gabi3331g00032	511	CDD	SF2_C_DEAD	349	478	-	-
	Gabi3331g00032	511	Gene3D	-	94	341	IPR027417	-
	Gabi3331g00032	511	SMART	ultradead3	156	352	IPR014001	-
	Gabi3331g00032	511	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	137	165	IPR014014	GO:0003724
	Gabi3331g00032	511	Pfam	Helicase conserved C-terminal domain	363	469	IPR001650	-
	Gabi3331g00032	511	SMART	helicmild6	388	469	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3331g00032	Gabi-Chr3331	334373	347506	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3331g00032	137	501	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.965	2.59e-94	291

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3331g00032	K12614		-	tcc:18614173	838.18