Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3331g00028 ATGGATCGTGGGGATCAAATTGCATTATCTGGGTCTGCATCTTACTATATGCACAGAGGAATACCTGGTTCTGGAACTCAACCTGAATTACACAACTCACCTGGTATCCGTCCACTGTCTAATCCCAATGTACCATTTCAATCAAGCATTGGGGGTAGTACCATTGGATCCACATTACCATTAGAATCTTCAGGAATTTCATCTCAATGTGTCAATGTTGGTGCTTCTTCTGGGGCTGCAACTGGTGAAGCTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATATGGTCCTGATGGAGCTGTGTCATTGACATTGACTCCAACACCAGCTAGTCATCATGGAACCATGACTCAAAGCCCAAAACGTGGTAGAGGGCGCCCTCCTGGTTCTGGGAAGAAACAGCAATTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATATCATCACCATTGCAGTTGGAGAAGACATTGCAACAAAAATTATGGCATTTTCGCAGCAGGGGCCTAGAGCTATATGTATTTTGTCAGCCAATGGGGCTGTCTCCACTGTGACACTTCGTCAGCCTTCAACTTCAGGTGGCACTGTCACATATGAGGGACGTTTTGAGATCCTATGCCTGTCAGGCTCTTACTTGCTCGCTGATAACGGCGGCTCCCGCAACCGAACTGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGTCGTGTCATCGGTGGAGGAGTTGGTGGAGTGCTTATTGCAGCAAGTCAAATTCAGGTGATAGTTGGGAGCTTTCTATGGGGCGGATCAAAGACCAAGAACAAGAAAAAGGAAGGTTCAGAAGGTGCAGAAGTTGCTTTAGAGTCAGATCATCAGGAAGTTCATAATCCAGTTGCAGTGAATAGCATTTCCCCAAATCAAAATCTTACTCCAACCTCATCACTAAGTCCTTGGCCGGCATCGCGTCCGTTGGATATGCGTAATTCCCATATTGACATTGATTTAATGCGGGGGTGA 1020 0.4647 MDRGDQIALSGSASYYMHRGIPGSGTQPELHNSPGIRPLSNPNVPFQSSIGGSTIGSTLPLESSGISSQCVNVGASSGAATGEAVKRKRGRPRKYGPDGAVSLTLTPTPASHHGTMTQSPKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLADNGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIAASQIQVIVGSFLWGGSKTKNKKKEGSEGAEVALESDHQEVHNPVAVNSISPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3331g00028 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 62 314 IPR039605 GO:0003680
Gabi3331g00028 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 153 266 IPR005175 -
Gabi3331g00028 339 MobiDBLite consensus disorder prediction 73 136 - -
Gabi3331g00028 339 MobiDBLite consensus disorder prediction 300 324 - -
Gabi3331g00028 339 MobiDBLite consensus disorder prediction 16 51 - -
Gabi3331g00028 339 ProSiteProfiles PPC domain profile profile. 147 287 IPR005175 -
Gabi3331g00028 339 CDD DUF296 152 241 IPR005175 -
Gabi3331g00028 339 SMART AT_hook_2 121 133 IPR017956 GO:0003677
Gabi3331g00028 339 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Gabi3331g00028 339 FunFam AT-hook motif nuclear-localized protein 1-like 153 284 - -
Gabi3331g00028 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 151 269 - -
Gabi3331g00028 339 MobiDBLite consensus disorder prediction 300 320 - -
Gabi3331g00028 339 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Gabi3331g00028 339 PRINTS AT-hook-like domain signature 119 130 IPR017956 GO:0003677
Gabi3331g00028 339 Gene3D - 153 293 - -
Gabi3331g00028 339 MobiDBLite consensus disorder prediction 26 51 - -
Gabi3331g00028 339 MobiDBLite consensus disorder prediction 104 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3331g00028 Gabi-Chr3331 291355 296278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3331g00028 1 339 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 51.944 3.94e-91 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3331g00028 - - gmx:100799791 558.14