Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3329g00040 ATGGATCCTCCTCTCATCAACGATTCCACATTCTCTCCTGCTTACCCTCTCGCCGAGATTTGGCCTGCTGGATTGGTTCATTTGCCTTCCAATTTCATCCTCCCTGATGCCTCCGCCGACGAGTCCACCGTCACCGATCATAGTGGCGCCGCCGCCGCTAACCGAAATCAGAGGAAGAGAAAGAAGGAAACCGCCTCCGAAGACGACTGCTCCAAGATGGTTTCCACCAGCTCTGCTAATGACTTGAATGATTCTGGCGATGAACGGATAAAATTAGGAGGATACACTGTTGAAAATGATTGTTTGAAAGCTGAAGCGGAAGAAAGTTCAGCGGTGGGTAACAAGTCATCTGAACAGGTTACTAAATCTTCCGAGCCACCTAAGCAAGACTATATTCATGTGAGAGCAAGAAGGGGTCAAGCTACTGATAGCCACAGTCTAGCAGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCAGGATGTAACAAGGTAATTGGTAAGGCACTTGTCCTGGATGAGATAATCAATTATATCCAGTCACTGCAGCATCAGGTTGAGTTTCTTTCTATGAAGCTTGAAGCAGTTAATTCAAGAGTGAACATGAACCCTGCTATTGAAGGGTTTCCTTCAAAAGATGTTGGTACTCAGCCATTTGACGTTGCTGGAATGATATTTGGATCACAAGCGGCAAGGGAGTATTCTCAGGGATCTCATCCTGGATGGCTGCATATGCAGATAGGTGGTGGTTTTGAGAGAGCCACATAG 792 0.4621 MDPPLINDSTFSPAYPLAEIWPAGLVHLPSNFILPDASADESTVTDHSGAAAANRNQRKRKKETASEDDCSKMVSTSSANDLNDSGDERIKLGGYTVENDCLKAEAEESSAVGNKSSEQVTKSSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRVNMNPAIEGFPSKDVGTQPFDVAGMIFGSQAAREYSQGSHPGWLHMQIGGGFERAT 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3329g00040 263 MobiDBLite consensus disorder prediction 106 130 - -
Gabi3329g00040 263 Gene3D - 137 214 IPR036638 GO:0046983
Gabi3329g00040 263 CDD bHLH_AtBPE_like 130 212 - -
Gabi3329g00040 263 MobiDBLite consensus disorder prediction 42 87 - -
Gabi3329g00040 263 FunFam Basic helix-loop-helix transcription factor 137 209 - -
Gabi3329g00040 263 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 53 233 IPR024097 GO:0006355
Gabi3329g00040 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 210 IPR036638 GO:0046983
Gabi3329g00040 263 MobiDBLite consensus disorder prediction 110 126 - -
Gabi3329g00040 263 Pfam Helix-loop-helix DNA-binding domain 144 191 IPR011598 GO:0046983
Gabi3329g00040 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 190 IPR011598 GO:0046983
Gabi3329g00040 263 SMART finulus 146 196 IPR011598 GO:0046983
Gabi3329g00040 263 Coils Coil 187 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3329g00040 Gabi-Chr3329 415046 418607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3329g00040 1 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 51.568 6.21e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3329g00040 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3329g00040 - - gmx:100777819 365.155