Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3329g00037 ATGGTGAAGTCTCAATGCTGTGAAAAAATCAGTGTCAAAAGGGGTGTGTGGACAGCAGAAGAAGATGCAAAGATACTTGCATTTGTCTCCAAGCATGGATCTGGTAACTGGACTTCTGTCCCCAAAAAAGCAGGACTTAAGAGGTGTGGGAAGAGTTGCAGGCTTAGGTGGACTAACTACCTCAGGCCTGATCTTAAACATGATAACTTCACACCCCAAGAAGAAGATTTAATCATTAAGCTTCACGCAGCCATTGGTAGCAGGTGGTCTATAATAGCCCAACAACTTCCTGGGAGAACAGACAATGATGTAAAGAACTATTGGAACACAAAGCTGAAAAAGAAGCTCTCTCAAATGGGGATAGACCCAGTTACCCACAAGCCCTTCTCTAAACTCATTGCTGACTATGGAAATATTGGTGGTTGCCAGAAACCAAGTACCCGAATTGGACCTGTCAATAAAGACTTCAAGAATGCAATCCTGTTAAAATCAGAGCCATATCAAGCCCTCCCACAAGGATTTAGAAACATCAATGACCAACCAGAGCTACCACCAACATCATCGCCACCCAAAATGGAACCAACTCCAAATAGCTTTTTCTTTAACCAAAGTCATAGTGATAACCTCTCAATGGATCTTGCTCAGTTTCAATCCATACCAATAATGACAAGTGCCTCAAATGGCAAGGAATTAGCATCTATATTTGGGGAAGGCTGCTTATCAAAAACTTCTTCATCATCATCATCATCATCATCTACTTCTTCTACTGCAGCACATGAAGCCTCACCCATACCCTTCAGTTGGAATGACTTTCTTCTAGAAGATGCTTTTGCACCACCTGCTGATAACCAAGAACAAGATCTAGTAGCTGGATTCTTGTCAAAGGACTTGGTGAGCCAAATAGAGAATGTGACGAGACAAAGTTGGAATAAGAAAGAGCTCAGATCACACCAAGCCCCAAGCAATGACTTCCAATTTTCATCATCCCCTAGTATTTCATTCGTAGAAGCCATGCTTGATCAAGAAAATGAGATGTTTCTAAGTTTCCCTCACCTTATGGAGGAACCATCCAACTACTGA 1080 0.4194 MVKSQCCEKISVKRGVWTAEEDAKILAFVSKHGSGNWTSVPKKAGLKRCGKSCRLRWTNYLRPDLKHDNFTPQEEDLIIKLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGGCQKPSTRIGPVNKDFKNAILLKSEPYQALPQGFRNINDQPELPPTSSPPKMEPTPNSFFFNQSHSDNLSMDLAQFQSIPIMTSASNGKELASIFGEGCLSKTSSSSSSSSSTSSTAAHEASPIPFSWNDFLLEDAFAPPADNQEQDLVAGFLSKDLVSQIENVTRQSWNKKELRSHQAPSNDFQFSSSPSISFVEAMLDQENEMFLSFPHLMEEPSNY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3329g00037 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3329g00037 359 SMART sant 13 63 IPR001005 -
Gabi3329g00037 359 SMART sant 66 114 IPR001005 -
Gabi3329g00037 359 MobiDBLite consensus disorder prediction 173 201 - -
Gabi3329g00037 359 CDD SANT 69 112 IPR001005 -
Gabi3329g00037 359 PANTHER F14D16.11-RELATED 1 359 - -
Gabi3329g00037 359 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Gabi3329g00037 359 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3329g00037 359 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3329g00037 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gabi3329g00037 359 CDD SANT 17 61 IPR001005 -
Gabi3329g00037 359 Gene3D - 7 67 - -
Gabi3329g00037 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gabi3329g00037 359 FunFam Transcription factor RAX3 7 67 - -
Gabi3329g00037 359 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3329g00037 359 FunFam Os07g0634900 protein 69 128 - -
Gabi3329g00037 359 Gene3D - 68 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3329g00037 Gabi-Chr3329 381252 383113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3329g00037 1 355 MYB Transcription Factor Family AT3G28470 43.539 5.27e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3329g00037 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3329g00037 K09422 - gmx:100795381 474.937