Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3329g00025 ATGGGGCATAAAAAGCGAAACCCTGCCACACGCTCGAAACAATCTGCTGCGACGGCGGCGGCGGGTTCTCCGGTGTCACCACCGACTAACGGAAAAGCGTCCAACGGCACAATCATTTCGGCGGAACCGGAGTCATGCGCGGTTTCCGATCACGGTGTCGATAAGATCGAATTCACGACCTCTCAATCTGATGCTTCGGCTAACTCCGCAATCAAGCAGGAATGCGAGCGAGCCCTAACGGCGCTCCGGCGCGGAAACCACTCTAGGGCGCTGAAGCTGTTGAAGGATTGCTGCTCCAGGCACGAGAGTTCTCCTCAGTTGGGCTTCGCTCACCGAGTTCAGGGCACAGTGTGCGTCAGACTGGCGGCGATTATCGACGACCCGAGCTCGAAGCAGAGGCATATGAGGAACGCCGTTGAGTGTGCAAGGAAAGCGACGGAACTGTCCCCGAATTCGATCGAGTTTTCGCAATTCTACGCGAATTTGCTGTTCGACACTGCAAGCGAAGGGAAGGAATTTGAGGAGGTTGTGCAGGAGTGCGAGAGGGCGTTGGCGGTTGAGAATCCTAATGATCCTGCTAAGGAGAGCTTGCAGGATGAGAGCCAGCAGAAGATATCAACGGCGGAAGCACGTGTGGTGCACGTGCAGAACGAGCTTCGGCAGCTGATTCAGAAGGCCAACATTGCTTCGTTGTCGAGTTGGATGAAGAACTTGGGAAATGGGGAGGAGAGGTTTCGGTTGATTCCGATAAGGAGGTCCACTGAGGACCCTATGGAAGTGAGGTTGGTTCAGAGCAGAAGGCCCAATGAGATCAAGAAGGTCACCAAGACCCCCGAAGAGAGGAGGAAAGAAATTGAAGTTCGAGTTGCTGCTGCGAGGTTGTTGCAGCACAAGTCAGAGTCACCACAAGTTCAGAGTGAAGGAGATAGGGATGAAAGGACATTGGATTCGTCTTCTTCAGGAGCTGGTCATAGGAGGAAGTATGGACATATGAGAAAGAATGGGTCTTCAGCTGAAAGGAAGGATTGGGTACGCTCATATTGGAATGTGATGAGTATGGATATGAAGAAGGGCTTGCTTAGTATTAGAGTTTGTGATCTCAAGTCCTACTTTGGGTCTTTGAAGGATACTTTGCCTAACGAGGTTTTATCAGAGGCTTTGTCATATGCCGAGGCCAATAAAACATGGAACTTCTGGCTTTGCTGCCGATGTGATGAGAAATTTTCGAATTCGGAATCTCACGGGCAGCATGTTGTGCAGGAACACCTGGGGAATCTCTTGCCCAAAATGCAGGGGCTTTTGCCCCAGAATGTTGACAATGAATGGACTGAGATGATTCTTAATTGTTCTTGGAAGCCACTGGATGTCTCGTCAGCTGTTAAAATGCTTGAAAACAGAGCAAAATCCAGAGATCCTTCATTCTCTGAGGATTCCTACTTGGGTCATCATGGAGAGGAGTACATTAATTGTTTTAAAGACCCAAGTGATTCTTACCATGATAATGGAATTACAAGGTATAATCTTCATAATTGTACAACAAAAAGCAGTAACTATTGTAAAATTGCAGAAAGTGATATTGGAGGTGGTGTTGAAGTCCAAGGATCTGTAGCATATCCCCTTGCTGTTAGTTGGCCAATATCTGATGACTCTGAGCGTGCAAAACTTCTTGGGAAAATTCGTGCAGTATTTGAGATGCTTATTAAACACAAATATCTTGCTGCTAATCATCTTAACAAGGTCATCCAATTTACTATGGATGAGATACAGGGCCTTGCTGGTGGTTCTCAACTCCTTAACCATGGTTTGGACCAAACACCAATGTGCATATGCTTTCTGGATGCAGCCCAGCTTAAGAAAATTATCCAATTTTTACAGGAATTATCTCATGCCTGTGGTTTGGGTAGATATACTGACAGAAGCAGTAGTCCCATGTATGATTTGAACAATACTAATCAAGGTCCTGAGATCAAAGAGAAGATTGTTCTCAATGGCGATGCATCCTGCCTCCTCCTGGATGAGTGTTTACTGCCAACACATGACACGTCTGGTACAGCTCAGGGAGGTGTCTTGGATAATGCAACTGCCTCAGCTTCTCCTGACAGGGTTTCACACAACACCGATGCTTTGCTATCCTGGATATTTTCAGTTTCACCTAGCGGGGATCAATTGACATCATGGATGCGTGCAAGAGAAGATAGAAGACATCAAGGAATGGAAATTGTCCAGTTGCTCGAGAAGGAGTTTTATCACCTACAGAGCCTCTGTGAGAAGAAATATGATCGTGTAAGTTATGAAGAAGCTCTGCAGGCAGTAGAGGATCTTTGTCTTGAGGAAGGTAAGAAGAGGGAAAACATTGGCGAATTTGTCCAGCGAAGCTATGAGTCTGTCTTAAGAAAACGGAGAGATGAGCTCATTGAGAGTCAGAATGATGTGACCTATGTTAGCAATAGGTTTGAGTTGGATGCTGTATCAAATGTTTTGCAAGAAGCTGAAGCAATGAATGTTAATCAATTTGGTTATGAAGAAACTTATGCTGGTGTGACTTCTCAGCTATGTGATTTGGAATCTGGTGAAGATGAATGGAGAATGAAGGAATATTTGCATCAAATGGATGGCTGTATAGAACTTGCTATTCAGAAACTGAAGGAGCACTTATCTGTAGAGCTGAGCAAAATTGATGCACGAATCATGAGAAATGTTACAGAGATGCAGCAATTGGAACTCAAACTTGGGCCTATTTCTGCTTATGATTATCGAGCAATATTATTGCCTCTTGTGAAGTTATATCTTAGGGCTCTTTTGGAAGATTTGGCTGAGAAAGATGCGACAGAGAAGTCTGATGCTGCAAGAGAAGCATTTTTGGCTGAACTTGCTCTTGATTCTAAGAAGATTGCTCAAGGGACAAGCGAGAACACACGACATACGGAGAAGACAAAAGATAAGAAGAAGAATAAAGATCATAGAAAAACAAGAGATTTAAAGGTTACAAGTGGTCATGAGCAGCTCTTGCTTCAAGCTACAATTCCTGATTCTTATCCAGTTTCACCTGATAGCAACTATCAAGGTTCTGAGGTTGTTGTTTCTATGGATGGTGATGACTTGGATCAGCAGGAAGAGGAATTTAGATGTAAAATTGAGCTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAATTTCAACGAAGGATAGAAAATGAAGCTAAACAGAAGCACCTTGCTGAGCGACAAAAGAAATCATCTGGGACATATTTAGAGAAAGCAGCAGACAACCGTCAGGATGCTCAGTTGAAGGTGGTTGCTGATGGCCCAGATTTACATGAACATATAAGACCACCTGTGCAGGAGGAGTTGGCAAAGGAGAATGTGCACCCAAGCAATGTGGATGGTGTGCTTATTACCACAACAAATGGTTTCATGGCGCCAATTAAATCTTCAGCTGATTTAGCTGCCCACAAGATTCATTATACGCATCATTCGAAAGCTAAACAAGGAGATATGGCTAATGGTGTAGTTACGGAGAATGGTGTTCAGTTGTCTGATCGGCGTGCAGGAAAAAAACATAAACGGCATAAGAATCCTTCCACGTTGGTTGATGGGAAGTTGGAATCTGTTGCATTGGAAAAAGAGAATATTGAGGTTACACATACTGATAATCACTTAAGAGAGCAGGCTAAAGTCTATAACAACCAAGATGCTAACAATGTGTGGGGAGACAATGGATTAAAGACGGTGAAAGAGTTGCAAGTTGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAAAAGCTGTAAGCCAAAGTCTAGATACATATCAAGCACATAGGAAAGTGCCTTCAGTTTCCAATTTGAGAACGTCTCAGAGAACTTCACAAGTAGATAGTGTGGGTTGTCCATTGGAGGAAGAAACAACTGAGAATGTGAATGGAATAACTTCTATTGGTGCTGGGCTGAAGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCGTTGTGGCATTTAAAACGCTTTCGGGAGGAATTTCTTGGCAGACCTAGATCGGAGCATGATCATGTGGGTAATCCTTGTGTTGTCTGTGCATTGTATGACATCTTTACTGCCATGGATGTTGTTGTATCAAAACACTTTAGGAGAGAAGCAGTTGCACCTACTTCCCTCAGGATCGCTCTCAGCAATCTATATCCAGATAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAAGTACTGGCAGTGATATTTGACTGCCTCCATCGATCATTTACTCGGAGTTCAAGTGTTTCTGATACAGAATCAGTGGAAAGCAACTGCATGGGATCTTGGGATTGTGCTAACAGTACTTGTATAGTACATTCACTCTTTGGAATGGACATTTTTGAACGAATGAACTGCTACCACTGTGGTCTTGAGTCCAGGCACTTGAAGTATACTTCCTTCTTTCACAATATAAATGCCAATGCCCTTCGGACAATGAAGGTAATGTGTGCTGAAAGCTCCTTTGATGAGCTTTTGAATCTTGTGGAAATGAACCATCAGTTGGCTTGTGATCCAGAAGTTGGTGGTTGTGGCAAGCTGAACTACATCCATCACTTTCTTTCAACTCCACCGCATGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGTGAGAGTGCTGATGACATATCAGCAACTGTTGCAGCCCTCAGCACTGAGATGGATATCAGTGTCCTTTATCGTGGTTTAGATCCTAAAAGCACTCATAGCTTGATTTCGATGGTTTGCTATTATGGGCAGCATTATCATTGCTTTGCTTATAGTTATGAGCACGAACAATGGATTATGTATGATGACAAGACAGTCAAGATAATTGGTGGATGGACTGATGTTCTTGCAATGTGTAAAAGAGGGCATCTGCAACCCCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4956 0.436 MGHKKRNPATRSKQSAATAAAGSPVSPPTNGKASNGTIISAEPESCAVSDHGVDKIEFTTSQSDASANSAIKQECERALTALRRGNHSRALKLLKDCCSRHESSPQLGFAHRVQGTVCVRLAAIIDDPSSKQRHMRNAVECARKATELSPNSIEFSQFYANLLFDTASEGKEFEEVVQECERALAVENPNDPAKESLQDESQQKISTAEARVVHVQNELRQLIQKANIASLSSWMKNLGNGEERFRLIPIRRSTEDPMEVRLVQSRRPNEIKKVTKTPEERRKEIEVRVAAARLLQHKSESPQVQSEGDRDERTLDSSSSGAGHRRKYGHMRKNGSSAERKDWVRSYWNVMSMDMKKGLLSIRVCDLKSYFGSLKDTLPNEVLSEALSYAEANKTWNFWLCCRCDEKFSNSESHGQHVVQEHLGNLLPKMQGLLPQNVDNEWTEMILNCSWKPLDVSSAVKMLENRAKSRDPSFSEDSYLGHHGEEYINCFKDPSDSYHDNGITRYNLHNCTTKSSNYCKIAESDIGGGVEVQGSVAYPLAVSWPISDDSERAKLLGKIRAVFEMLIKHKYLAANHLNKVIQFTMDEIQGLAGGSQLLNHGLDQTPMCICFLDAAQLKKIIQFLQELSHACGLGRYTDRSSSPMYDLNNTNQGPEIKEKIVLNGDASCLLLDECLLPTHDTSGTAQGGVLDNATASASPDRVSHNTDALLSWIFSVSPSGDQLTSWMRAREDRRHQGMEIVQLLEKEFYHLQSLCEKKYDRVSYEEALQAVEDLCLEEGKKRENIGEFVQRSYESVLRKRRDELIESQNDVTYVSNRFELDAVSNVLQEAEAMNVNQFGYEETYAGVTSQLCDLESGEDEWRMKEYLHQMDGCIELAIQKLKEHLSVELSKIDARIMRNVTEMQQLELKLGPISAYDYRAILLPLVKLYLRALLEDLAEKDATEKSDAAREAFLAELALDSKKIAQGTSENTRHTEKTKDKKKNKDHRKTRDLKVTSGHEQLLLQATIPDSYPVSPDSNYQGSEVVVSMDGDDLDQQEEEFRCKIELEEEEKKLEETLEFQRRIENEAKQKHLAERQKKSSGTYLEKAADNRQDAQLKVVADGPDLHEHIRPPVQEELAKENVHPSNVDGVLITTTNGFMAPIKSSADLAAHKIHYTHHSKAKQGDMANGVVTENGVQLSDRRAGKKHKRHKNPSTLVDGKLESVALEKENIEVTHTDNHLREQAKVYNNQDANNVWGDNGLKTVKELQVEDEEEERFQADLKKAVSQSLDTYQAHRKVPSVSNLRTSQRTSQVDSVGCPLEEETTENVNGITSIGAGLKNEVGEYNCFLNVIIQSLWHLKRFREEFLGRPRSEHDHVGNPCVVCALYDIFTAMDVVVSKHFRREAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTRSSSVSDTESVESNCMGSWDCANSTCIVHSLFGMDIFERMNCYHCGLESRHLKYTSFFHNINANALRTMKVMCAESSFDELLNLVEMNHQLACDPEVGGCGKLNYIHHFLSTPPHVFMTVLGWQNTCESADDISATVAALSTEMDISVLYRGLDPKSTHSLISMVCYYGQHYHCFAYSYEHEQWIMYDDKTVKIIGGWTDVLAMCKRGHLQPQVLFFEAVN 1651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3329g00025 1651 ProSitePatterns Zinc finger C2H2 type domain signature. 401 422 IPR013087 -
Gabi3329g00025 1651 Gene3D Cysteine proteinases 1293 1649 - -
Gabi3329g00025 1651 MobiDBLite consensus disorder prediction 296 335 - -
Gabi3329g00025 1651 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1317 1650 IPR028889 -
Gabi3329g00025 1651 MobiDBLite consensus disorder prediction 965 996 - -
Gabi3329g00025 1651 MobiDBLite consensus disorder prediction 11 40 - -
Gabi3329g00025 1651 SUPERFAMILY Cysteine proteinases 1317 1648 IPR038765 -
Gabi3329g00025 1651 Pfam Protein of unknown function (DUF629) 344 875 IPR006865 -
Gabi3329g00025 1651 CDD Peptidase_C19 1409 1648 - -
Gabi3329g00025 1651 Pfam Ubiquitin carboxyl-terminal hydrolase 1326 1626 IPR001394 GO:0004843|GO:0016579
Gabi3329g00025 1651 Pfam Protein of unknown function (DUF627) 77 188 IPR006866 -
Gabi3329g00025 1651 MobiDBLite consensus disorder prediction 303 320 - -
Gabi3329g00025 1651 Coils Coil 205 225 - -
Gabi3329g00025 1651 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1650 - -
Gabi3329g00025 1651 Coils Coil 1044 1071 - -
Gabi3329g00025 1651 Gene3D Tetratricopeptide repeat domain 63 224 IPR011990 GO:0005515
Gabi3329g00025 1651 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3329g00025 Gabi-Chr3329 282674 293694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3329g00025 71 1648 C2H2 Transcription Factor Family AT3G47890 56.281 0.0 1717