Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3329g00019 ATGGGAAACTGCAACGCTTGCACGAGAGCTGATGTGGTGGAGGACAACACCCGGTCGAGCGACACCAACCGTGGTCGGAAGAAGGAAACGAACCACAAAAAAACGAACCCATTCTCGGACGAACCGGTCCGGTCTGCGGCCCCGATCCGGGTCCTGAGGGACGTGATTCCAATGAGCCACCGAACCCGAATCAGCGACAAGTACATACTGGGCCGTGAACTGGGCCGGGGAGAGTTCGGCATCACGTACCTTTGCACGGACCGTGAGACGAATGAGGCCTTGGCCTGCAAGTCGATCTCGAAGCGGAAGCTTCGAACCGCCGTCGACATCGACGATGTGAGGCGCGAGGTAGCGATCATGTCCACGCTGCCCGAACACCCAAACATCGTGAAGCTCAAGGCAACGTACGAGGACAACGAGAACGTCCACCTCGTCATGGAGCTCTGTGAAGGTGGCGAGCTTTTCGACAGGATTGTCGCTAGGGGTCATTACAGTGAACGCGCCGCCGCCGCCGTCGCTCGGACCATCGCCGAGGTTGTTAGGATGTGCCACGCAAACGGCGTCATGCATAGAGACCTCAAGCCTGAGAATTTTCTCTTTGCTAATAAGAAAGAAAACTCTGCTCTTAAGGCCATTGATTTTGGCCTCTCTGTGTTTTTCAAGCCTGGAGAGAGATTTTCGGAGATTGTTGGGAGTCCTTACTATATGGCGCCGGAGGTTTTGAAGAGGAATTACGGGCCAGAGGTTGATGTGTGGAGTGCTGGGGTGATTCTTTATATTTTGTTATGTGGGGTTCCTCCGTTTTGGGCAGAGACTGAACAAGGTGTGGCTTTGGCAATTTTGAGGGGTGTGATTGACTTCAAGAGGGAACCTTGGCCTCAGATATCGGATAGTGCTAAGAGCCTTGTGCGGCAGATGTTGGAGCCCGATCCTAAGAAGCGTTTGACGGCTGAACAGGTGCTTGGACATCCCTGGCTGCAAAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGGTCAAGGCTTAAACAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGGTCATTGCGGAGCATTTATCTGTTGAAGAGGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACAGAGATGGCAGAGTAACATATGAGGAACTGAAGGCCGGGTTGAAGAAAGTTGGTTCACAATTGGCTGAGCCAGAGATAAAGATGCTGATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTCGACTATGGAGAGTTTGTAGCTGTAACAATTCACTTGCAAAAAATGGAGAATGATGAGCATATCCACAAAGCATTTAAGTTCTTTGACAAAGATGGGAGTGGGTATATTGAGTTAGGTGAGCTACAGGAAGCATTAACAGATGAGTCAGGAGAAACTGATGCTGATGTGATAAATGACATCATGCGCGAAGTTGACACTGACAAGGATGGTTGCATCAGTTATGAGGAGTTTGTGGCCATGATGAAAACTGGAACTGACTGGAGAAAAGCATCTAGGCAATATTCAAGGGAGAGATTCAAGAGTTTGAGCCTAAATTTAATGAAGGACGGCTCACTTCAGCTTCATGATGGAATTAGTGGTGAAGCTGTAGTGGTTTGA 1653 0.487 MGNCNACTRADVVEDNTRSSDTNRGRKKETNHKKTNPFSDEPVRSAAPIRVLRDVIPMSHRTRISDKYILGRELGRGEFGITYLCTDRETNEALACKSISKRKLRTAVDIDDVRREVAIMSTLPEHPNIVKLKATYEDNENVHLVMELCEGGELFDRIVARGHYSERAAAAVARTIAEVVRMCHANGVMHRDLKPENFLFANKKENSALKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLGHPWLQNAKKAPNVPLGDIVRSRLKQFSVMNRFKKKALRVIAEHLSVEEVEIIKDMFTLMDTDRDGRVTYEELKAGLKKVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQKMENDEHIHKAFKFFDKDGSGYIELGELQEALTDESGETDADVINDIMREVDTDKDGCISYEEFVAMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLQLHDGISGEAVVV 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3329g00019 550 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
Gabi3329g00019 550 CDD EFh 445 507 IPR002048 GO:0005509
Gabi3329g00019 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Gabi3329g00019 550 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Gabi3329g00019 550 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Gabi3329g00019 550 ProSitePatterns EF-hand calcium-binding domain. 382 394 IPR018247 -
Gabi3329g00019 550 SMART serkin_6 68 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3329g00019 550 MobiDBLite consensus disorder prediction 15 39 - -
Gabi3329g00019 550 MobiDBLite consensus disorder prediction 15 44 - -
Gabi3329g00019 550 PANTHER SERINE/THREONINE-PROTEIN KINASE 61 502 - -
Gabi3329g00019 550 SUPERFAMILY Protein kinase-like (PK-like) 48 351 IPR011009 -
Gabi3329g00019 550 ProSiteProfiles Protein kinase domain profile. 68 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3329g00019 550 Gene3D - 335 510 - -
Gabi3329g00019 550 Gene3D Transferase(Phosphotransferase) domain 1 154 334 - -
Gabi3329g00019 550 Pfam EF-hand domain pair 374 433 IPR002048 GO:0005509
Gabi3329g00019 550 Pfam EF-hand domain pair 444 507 IPR002048 GO:0005509
Gabi3329g00019 550 SUPERFAMILY EF-hand 354 533 IPR011992 -
Gabi3329g00019 550 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Gabi3329g00019 550 Pfam Protein kinase domain 70 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3329g00019 550 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Gabi3329g00019 550 CDD STKc_CAMK 67 325 - -
Gabi3329g00019 550 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Gabi3329g00019 550 SMART efh_1 409 437 IPR002048 GO:0005509
Gabi3329g00019 550 SMART efh_1 481 509 IPR002048 GO:0005509
Gabi3329g00019 550 SMART efh_1 445 473 IPR002048 GO:0005509
Gabi3329g00019 550 SMART efh_1 373 401 IPR002048 GO:0005509
Gabi3329g00019 550 FunFam Calcium-dependent protein kinase 1 70 153 - -
Gabi3329g00019 550 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Gabi3329g00019 550 FunFam calcium-dependent protein kinase 13 154 334 - -
Gabi3329g00019 550 Gene3D Phosphorylase Kinase; domain 1 69 153 - -
Gabi3329g00019 550 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Gabi3329g00019 550 FunFam Calcium-dependent protein kinase 7 335 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3329g00019 Gabi-Chr3329 224629 229552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3329g00019 1 550 EF-hand Containing Proteins AT1G18890 82.000 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi3329g00019 Pkinase 2.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3329g00019 K13412 - gmx:100809838 1035.4