Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3329g00018 ATGGGCATGGATTACTACAACATATTGAAAGTGAATCGAAACGCGAGCGATGAAGATTTGAAGAAGGCTTACAAGAGGCTCGCTATGATATGGCACCCTGACAAGAACCCCGTTAACAAGAGCGAAGCCGAAGCCAAATTCAAACGAATCTCCGAAGCCTACGACGTTTTGAGCGATCCGCAGAAGCGTCAGATCTACGATCTCTACGGCGAGGAGGCACTGAAGTCCGGTCAGTTCCCGCCACCTCCGCAATCTTCTTCTTCTTCGTCGTCTTCGTCTTCACGCGTTTACCAGAACCACCACCACCGCCAGAACCCTACCACCTCGTTCCGCTTCAACCCCCGCGACGCCGACGACATTTACGCCGAGTTCTTCGGTCCCGACGGCGCCGACGCCGGCGGCGGTCCCCGCAGGGACGCGTTCTTTAGGACCTCGAATGGCTCCGCGTTTGGCGGAGCGGGAAGGAAGGCCGCCGCGGTGGAGAACCTGTTGCCGTGTAGCTTGGAAGACCTTTATAAAGGTGTCAAGAAGAAGATGAAGATCTCGAGGAATGTCTATGATGCTTTTGGGAAATGTCGGAATGTGGAGGAGATTTTGACTATTGAGATTAAACCTGGCTGGAAGAAAGGAACAAAGATTACCTTCCCAGAAAAGGGTAACCAGCAGCCTGGCGTGATCCCAGCAGATCTTATTTTTGTGATAGATGAGAAACCACATGCTCTTTATAGAAGGGATGGTAGTGATTTGGTGATCAACCAGGAGATAACTCTTCTGGATGCGCTTACAGGTAAAACCTTGGACCTCACCACCTTGGATGGAAGGAGTCTCGTGATCCCATTGACAGATATAGTCAAACCTGGTGCTGAGGTTGTTGTCCCTAATGAAGGAATGCCCATATCAAAAGAGCCTGGGAGGAAGGGGAATTTGAGAATCAAGCTTGATGTTAAGTATCCTTCAAGGTTAACTCCAGAACAGAAATCTGATCTGAGGAGAGTTTTAGGTGGAAGCTCATAA 1014 0.5 MGMDYYNILKVNRNASDEDLKKAYKRLAMIWHPDKNPVNKSEAEAKFKRISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPPPQSSSSSSSSSSRVYQNHHHRQNPTTSFRFNPRDADDIYAEFFGPDGADAGGGPRRDAFFRTSNGSAFGGAGRKAAAVENLLPCSLEDLYKGVKKKMKISRNVYDAFGKCRNVEEILTIEIKPGWKKGTKITFPEKGNQQPGVIPADLIFVIDEKPHALYRRDGSDLVINQEITLLDALTGKTLDLTTLDGRSLVIPLTDIVKPGAEVVVPNEGMPISKEPGRKGNLRIKLDVKYPSRLTPEQKSDLRRVLGGSS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3329g00018 337 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi3329g00018 337 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi3329g00018 337 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi3329g00018 337 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi3329g00018 337 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi3329g00018 337 FunFam DnaJ subfamily B member 13 3 134 - -
Gabi3329g00018 337 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gabi3329g00018 337 CDD DnaJ 4 59 IPR001623 -
Gabi3329g00018 337 Gene3D DnaJ domain 2 134 IPR036869 -
Gabi3329g00018 337 Pfam DnaJ domain 4 67 IPR001623 -
Gabi3329g00018 337 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 239 IPR008971 GO:0006457|GO:0051082
Gabi3329g00018 337 SUPERFAMILY HSP40/DnaJ peptide-binding domain 242 327 IPR008971 GO:0006457|GO:0051082
Gabi3329g00018 337 SUPERFAMILY Chaperone J-domain 3 84 IPR036869 -
Gabi3329g00018 337 Gene3D - 158 237 - -
Gabi3329g00018 337 SMART dnaj_3 3 62 IPR001623 -
Gabi3329g00018 337 Gene3D - 239 319 - -
Gabi3329g00018 337 MobiDBLite consensus disorder prediction 74 112 - -
Gabi3329g00018 337 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 3 333 - -
Gabi3329g00018 337 FunFam DNAJ heat shock family protein 238 333 - -
Gabi3329g00018 337 CDD DnaJ_C 164 321 - -
Gabi3329g00018 337 MobiDBLite consensus disorder prediction 79 112 - -
Gabi3329g00018 337 FunFam Dnaj homolog subfamily b member 156 237 - -
Gabi3329g00018 337 Pfam DnaJ C terminal domain 164 318 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3329g00018 Gabi-Chr3329 210173 215338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3329g00018 5 74 C2H2 Transcription Factor Family AT1G74250 35.135 5.43e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3329g00018 K09510 - gmx:100781572 542.347