Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3329g00017 ATGGGCATGGATTACTACAACATATTGAAAGTGAATCGAAACGCGAGCGATGAAGATTTGAAGAAGGCTTACAAGAGGCTCGCTATGATATGGCACCCTGACAAGAACCCCGTTAACAAGAGCGAAGCCGAAGCCAAATTCAAACGAATCTCCGAAGCCTACGACGTTTTGAGCGATCCGCAGAAGCGTCAGATCTACGATCTCTACGGCGAGGAGGCACTGAAGTCCGGTCAGTTCCCGCCACCTCCGCAATCTTCTTCTTCTTCGTCGTCTTCGTCTTCACGCGTTTACCAGAACCACCACCACCGCCAGAACCCTACCACCTCGTTCCGCTTCAACCCCCGCGACGCCGACGACATTTACGCCGAGTTCTTCGGTCCCGACGGCGCCGACGCCGGCGGCGGTCCCCGCAGGGACGCGTTCTTTAGGACCTCGAATGGCTCCGCGTTTGGCGGAGCGGGAAGGAAGGCCGCCGCGGAGATTTTGACTATTGAGATTAAACCTGGCTGGAAGAAAGGAACAAAGATTACCTTCCCAGAAAAGGGTAACCAGCAGCCTGGCGTGATCCCAGCAGATCTTATTTTTGTGATAGATGAGAAACCACATGCTCTTTATAGAAGGGATGGTAGTGATTTGGTGATCAACCAGGAGATAACTCTTCTGGATGCGCTTACAGGTAAAACCTTGGACCTCACCACCTTGGATGGAAGGAGTCTCGTGATCCCATTGACAGATATAGTCAAACCTGGTGCTGAGGTTGTTGTCCCTAATGAAGGAATGCCCATATCAAAAGAGCCTGGGAGGAAGGGGAATTTGAGAATCAAGCTTGATGTTAAGTATCCTTCAAGGTTAACTCCAGAACAGAAATCTGATCTGAGGAGAGTTTTAGGTGGAAGCTCATAA 903 0.5072 MGMDYYNILKVNRNASDEDLKKAYKRLAMIWHPDKNPVNKSEAEAKFKRISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPPPQSSSSSSSSSSRVYQNHHHRQNPTTSFRFNPRDADDIYAEFFGPDGADAGGGPRRDAFFRTSNGSAFGGAGRKAAAEILTIEIKPGWKKGTKITFPEKGNQQPGVIPADLIFVIDEKPHALYRRDGSDLVINQEITLLDALTGKTLDLTTLDGRSLVIPLTDIVKPGAEVVVPNEGMPISKEPGRKGNLRIKLDVKYPSRLTPEQKSDLRRVLGGSS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3329g00017 300 Gene3D - 139 201 - -
Gabi3329g00017 300 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi3329g00017 300 MobiDBLite consensus disorder prediction 74 113 - -
Gabi3329g00017 300 SUPERFAMILY Chaperone J-domain 3 84 IPR036869 -
Gabi3329g00017 300 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi3329g00017 300 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi3329g00017 300 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi3329g00017 300 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi3329g00017 300 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gabi3329g00017 300 CDD DnaJ 4 59 IPR001623 -
Gabi3329g00017 300 FunFam DnaJ subfamily B member 13 3 135 - -
Gabi3329g00017 300 SUPERFAMILY HSP40/DnaJ peptide-binding domain 160 202 IPR008971 GO:0006457|GO:0051082
Gabi3329g00017 300 CDD DnaJ_C 160 284 - -
Gabi3329g00017 300 Pfam DnaJ domain 4 67 IPR001623 -
Gabi3329g00017 300 Gene3D - 202 282 - -
Gabi3329g00017 300 Pfam DnaJ C terminal domain 133 281 IPR002939 -
Gabi3329g00017 300 SUPERFAMILY HSP40/DnaJ peptide-binding domain 205 290 IPR008971 GO:0006457|GO:0051082
Gabi3329g00017 300 Gene3D DnaJ domain 2 134 IPR036869 -
Gabi3329g00017 300 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 156 296 - -
Gabi3329g00017 300 SMART dnaj_3 3 62 IPR001623 -
Gabi3329g00017 300 MobiDBLite consensus disorder prediction 79 112 - -
Gabi3329g00017 300 FunFam DNAJ heat shock family protein 201 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3329g00017 Gabi-Chr3329 210173 215338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3329g00017 5 74 C2H2 Transcription Factor Family AT1G74250 35.135 5.83e-09 55.1